Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00912 ATGAGTCTTCTTCTTGCAGGGTTTTGTGATGGATTAAGCCAGTGGATTGATAATTGGGAAGCAGGAAGGGAGGAGATGAAAGGGGAGTCATCTGGGCTGATTATTGGAATTTCTATAGGAGTTGTGATTGGTGTTCTTTTGGCGATTTCGACTCTCTTTTGCTTTAGGTACCAACGGAGACGTTCTCAGATAGGAAATAGCAGTTCCCGGAGGGCTACGACGATTCCTATTCGGATCAATGGTGCTGACTCTTGCACTATTCTATCAGACTCAACCTTAGCTCCAGAGTCACCTGTTAAATCTGGCCACAATGGCATGTCACAATGGCTTGATGGATTCAGGAAAAGTAATGTGGTTGCAGCTTCTGGAATACTCGAGTATTCATACAGGGATCTGCAAAAGGCTACGTCCAATTTCACAACTGTAATAGGACAAGGAGCGTTCGGTCCTGTTTATAGAGCTCAGATGGCAGGTGGTGAAACGGTTGCGGTTAAGGTGCTTGCAACTGATTCCAAACAAGGGGAGAAAGAGTTCCAAACAGAGCTTTGTGCTTTTTGTTTATCCGATTCATCCATTAAACCTTCTTCGGTTTACCAGGTTATGCTTCTCGGAAGGTTGCATCATAGAAACCTCGTAAATTTGGTCGGTTACTGTGCTGAAAAAGCCCAACATATACTTGTATATGTGTATATGAGCAAAGGAAGCTTGGCTTCTCACTTATACGGCGGGAAGAATGAACCATTGAGCTGGGATCTGCGGGTTCGTGTGGCATTAGATGTTGCACGCGGACTGGAATATCTCCATGATGGTGCCGTTCCACCGGTAATACATCGGGATATCAAGTCTTCAAATATTTTGTTGGATGATTCCATGAGGGCTAGGGTTGCCGATTTCGGGCTTTCCAGAGAAGAGATGGTCGATAAACATGTATCCAATATTCGTGGAACTTTTGGGTACCTAGATCCCGAATATATATCTACTAGAAAATTCACAAAGAAAAGTGACGTTTACAGCTTTGGAGTATTGCTTTTCGAGCTTATAGCTGGCAGAACCCCACAACAAGGCCTTATGGAGTATGTTGAACTTGCAGCAATGACTTCGGATGGGAAAGTTGGGTGGGAAGAAATTGTGGACGATCGTTTAGATGGAAACTTTAATGTACAAGAGCTGAACGAAGTTTCATCTCTTGCATATAGATGTGTTAACCGTAGCCCTCGAAAACGGCCTTCCATGAGAGATATCGTACAAGTGATCTCACGGATTAACAACTTTAGGCTCGAGCAAAAGCATCATAGAAAATCTCTGTCAGCCATGACAGATGATGTTTCTATTGACATCGACCACTCCGAGCACTTTAGAAAGGATTCAATGGACAGTGCTTCTGATACCCATGAAATCTAG 1401 43.61 MSLLLAGFCDGLSQWIDNWEAGREEMKGESSGLIIGISIGVVIGVLLAISTLFCFRYQRRRSQIGNSSSRRATTIPIRINGADSCTILSDSTLAPESPVKSGHNGMSQWLDGFRKSNVVAASGILEYSYRDLQKATSNFTTVIGQGAFGPVYRAQMAGGETVAVKVLATDSKQGEKEFQTELCAFCLSDSSIKPSSVYQVMLLGRLHHRNLVNLVGYCAEKAQHILVYVYMSKGSLASHLYGGKNEPLSWDLRVRVALDVARGLEYLHDGAVPPVIHRDIKSSNILLDDSMRARVADFGLSREEMVDKHVSNIRGTFGYLDPEYISTRKFTKKSDVYSFGVLLFELIAGRTPQQGLMEYVELAAMTSDGKVGWEEIVDDRLDGNFNVQELNEVSSLAYRCVNRSPRKRPSMRDIVQVISRINNFRLEQKHHRKSLSAMTDDVSIDIDHSEHFRKDSMDSASDTHEI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4776770 4779760 + CmoCh09G009120.1 Cmo09g00912 388914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00912 466 PANTHER OS01G0253100 PROTEIN 30 448 IPR045271 GO:0004714|GO:0006468
Cmo09g00912 466 Pfam Protein tyrosine and serine/threonine kinase 139 417 IPR001245 GO:0004672|GO:0006468
Cmo09g00912 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Cmo09g00912 466 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 30 448 - -
Cmo09g00912 466 SUPERFAMILY Protein kinase-like (PK-like) 124 431 IPR011009 -
Cmo09g00912 466 SMART serkin_6 137 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00912 466 Gene3D Transferase(Phosphotransferase) domain 1 231 445 - -
Cmo09g00912 466 CDD STKc_IRAK 143 421 - -
Cmo09g00912 466 Gene3D Phosphorylase Kinase; domain 1 119 230 - -
Cmo09g00912 466 ProSiteProfiles Protein kinase domain profile. 137 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00912 - - - csv:101216360 766.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01212 Cmo09g00912 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00993 Cmo-Chr4:4996587 Cmo09g00912 Cmo-Chr9:4776770 0 dispersed
Cmo04g02948 Cmo-Chr4:20879934 Cmo09g00912 Cmo-Chr9:4776770 4.36E-127 dispersed
Cmo09g00912 Cmo-Chr9:4776770 Cmo16g00876 Cmo-Chr16:4703604 0 dispersed
Cmo01g01212 Cmo-Chr1:9783257 Cmo09g00912 Cmo-Chr9:4776770 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001530 1 4 1 1 1 1 4 1 2 2 2 1 4 2 1 4 0 0 5 2 2 1 0 0 1 2 0 0 0 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74581 PF07714 PK_Tyr_Ser-Thr 1.40E-45 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00912 Cmo_Chr09 FPKM 5.571918 6.32071 9.534735 8.521834 12.698627 12.456027 12.96775 8.901382 10.668463 11.54899