Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00920 ATGCGATGGGGCGATTGGATCACAGAAAACAACTACCATTTGGAGCTTGCCATGGTTGACAACACTTGCCATTCGCCTATAAGAAGAAGATCAAGGAAGGGGGAAGAAGAAGACATGGAAATACAGAAGAAGATTGTGAAGAAGACAAGGGTAATCAAAGTTAGCTCAGAGGAATCATGGGATTGTTATGTTACAAAAGCTTTCAAACAAGGCTGCCCTGTTGTAGTGCATTTTAGTGCGAGCTGGTGCACACCCTCAAGAGCCATGAGCCCTTTCTTTGAAGAGCTGGCCTTGCAATACAAATATGTTTTGTTTCTTTCCGTGGATGTGGATGAAGCTAAGGAGGTTGCATCGAAGTTGGAGATAAAGGCCATGCCCACATTTGTATTGATGAAGAATGGAGCCCCAAACTATAAGCTTGTTGGAGCCAACCCAGTTGAGCTGAGTAGAAGGATCAAGGGCTTCATATATTGCTAA 477 43.82 MRWGDWITENNYHLELAMVDNTCHSPIRRRSRKGEEEDMEIQKKIVKKTRVIKVSSEESWDCYVTKAFKQGCPVVVHFSASWCTPSRAMSPFFEELALQYKYVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPNYKLVGANPVELSRRIKGFIYC 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4809094 4811839 + CmoCh09G009200.1 Cmo09g00920 388922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00920 158 SUPERFAMILY Thioredoxin-like 36 146 IPR036249 -
Cmo09g00920 158 Pfam Thioredoxin 53 150 IPR013766 -
Cmo09g00920 158 ProSiteProfiles Thioredoxin domain profile. 25 157 IPR013766 -
Cmo09g00920 158 CDD TRX_family 66 156 - -
Cmo09g00920 158 Gene3D Glutaredoxin 28 157 - -
Cmo09g00920 158 PANTHER THIOREDOXIN-LIKE PROTEIN CXXS1 43 156 - -
Cmo09g00920 158 PANTHER THIOREDOXIN 43 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00920 K03671 trxA; thioredoxin 1 - csin:114293453 165.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00920 Cmo-Chr9:4809094 Cmo12g00390 Cmo-Chr12:2418405 1.00E-27 dispersed
Cmo18g00308 Cmo-Chr18:1975484 Cmo09g00920 Cmo-Chr9:4809094 1.22E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g419 . . . . . . . . . . . Cma09g00923 . Car09g00839 Sed01g1426 Cpe06g00743 . Bhi09g01947 Tan01g4505 Cmetu04g0794 . Hepe01g1312 Mch11g1151 . . . . . . . . . . . . Lsi04g01246 . . . . . . . . . . . . . Cmo09g00920 . . . . . . . . . . . . . Cla05g01540 Cam05g1648 Cec05g1653 Cco05g1691 Clacu05g1641 Cmu05g1536 Cre05g1646 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003174 1 2 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 0 2 2 1 1 2 1 2 2 1 2 5 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00920 Cmo_Chr01 FPKM 138.117111 136.921036 97.556343 100.976051 333.893951 284.714722 318.84494 111.203194 115.979607 128.487228
Cmo09g00920 Cmo_Chr09 FPKM 135.763733 158.344986 80.003075 75.363548 363.976868 347.465302 348.752716 90.883484 84.325691 79.59549