Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g00921 | ATGGTATCCGCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTGATCGACGACACCCCTGTACCGAATGCGAATTTTCCGGTCACGAGTTCAAGCTTCTCCTGGGCTGTTCAGCCCTTTAATGGCTTCCCTGATGCCGGTGTGGAAATTGATGGATCATTGGCAGATTTGGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTCAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTTTGGAGGGACAGGCTCAACGACAAGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCTAAAACTGACAAGGCAGCGATTTTAGTTGACGCTGTTCGAATGGTGAATCAGTTGCGTAGTGAGGCTCGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTTCACGATGGGAAGCAGAAGCTCAAGGCAGATAAGGAGCAGCTAGAGCAGCAAGTAAAGTCCATGCCTGCTCAACCTGGCTTCTTACCTCCTCCACCAATCCCCACATTTGCTTCTCAGGGTCAAGCTCCTGGCAATAAGCTAGTTCTTTTCGTTGGTTACCACCCAGGAGTTACCATGTGGCAGTTCATGCCACCTGCTGCAGTAGACACGTCACAGGACCACGTACTCCGACCACCCGTCGCCTAA | 708 | 47.88 | MVSAENPNWLFDYSLIDDTPVPNANFPVTSSSFSWAVQPFNGFPDAGVEIDGSLADLDGRLESGSKKRVRSESCSASSSKACREKFWRDRLNDKFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEARKLKESNSSLQEKIKELKAEKNELHDGKQKLKADKEQLEQQVKSMPAQPGFLPPPPIPTFASQGQAPGNKLVLFVGYHPGVTMWQFMPPAAVDTSQDHVLRPPVA | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4812733 | 4816458 | + | CmoCh09G009210.1 | Cmo09g00921 | 388923 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g00921 | 235 | CDD | bHLH_AtILR3_like | 83 | 155 | - | - | |
| Cmo09g00921 | 235 | Coils | Coil | 116 | 178 | - | - | |
| Cmo09g00921 | 235 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 235 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 | |
| Cmo09g00921 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983 | |
| Cmo09g00921 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 153 | IPR036638 | GO:0046983 | |
| Cmo09g00921 | 235 | PANTHER | TRANSCRIPTION FACTOR ILR3 | 1 | 235 | - | - | |
| Cmo09g00921 | 235 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983 | |
| Cmo09g00921 | 235 | Gene3D | - | 78 | 156 | IPR036638 | GO:0046983 | |
| Cmo09g00921 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 126 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo09g00921 | Cmo16g00916 | CCT | |
| Cmo09g00921 | Cmo16g00916 | ECH | |
| Cmo01g01205 | Cmo09g00921 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01008 | Cmo-Chr4:5073534 | Cmo09g00921 | Cmo-Chr9:4812733 | 1.55E-104 | dispersed | |
| Cmo09g00921 | Cmo-Chr9:4812733 | Cmo16g00916 | Cmo-Chr16:5522341 | 2.27E-115 | dispersed | |
| Cmo01g01205 | Cmo-Chr1:9755296 | Cmo09g00921 | Cmo-Chr9:4812733 | 5.39E-126 | wgd | |
| Cmo13g00728 | Cmo-Chr13:7265344 | Cmo09g00921 | Cmo-Chr9:4812733 | 1.64E-63 | wgd | |
| Cmo18g00301 | Cmo-Chr18:1954504 | Cmo09g00921 | Cmo-Chr9:4812733 | 9.25E-36 | wgd | |
| Cmo02g00151 | Cmo-Chr2:740367 | Cmo09g00921 | Cmo-Chr9:4812733 | 4.47E-71 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 10383 | PF00010 | HLH | 1.90E-06 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g00921 | - | - | csv:101215402 | 383.259 |