Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00922 ATGGCGAAGTACTCTTTAGGCTCCGAACCAGTGGTGGGTTCGTTAACTCCGTCGAGGAAGAGGGAATACAGGGTCACCAACCGGCTTCAAGAAGGGAAAAGGCCTCTTTATGCTGTAGTTTTCAACTTCATCGACTCTCGCTACTTCAACGTCTTTGCCACTGTTGGCGGCAATCGGGTTACAGTTTATCAATGTCTTGAAGGGGGTGTTATAGCCGTGTTGCAGTCCTATGTCGACGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCGTTCAACGTCGATGGCTCCCCATTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGCTAGATGAACTAGCCATGGAGCTTAGATTTGACTTATTTCCTACTACTTGGATCTGCTCTTCTCTGCAGAGTTTTGTTGGTCATGGTGATTCAATAAACGAAATCAGGACTCAGCCACTGAAACCATCACTAGTGATCTCTGCTAGCAAAGACGAATCTGTTCGATTATGGAATGTTCATACAGGTATTTGCATTTTGGTATTTGCTGGTGCAGGTGGTCATCGTAATGAGGTCTTAAGCGTGGATTTCCATCCATCGGATATTTATCGCATCGCAAGCTGTGGCATGGACAACACTGTAAAAATTTGGTCAATGAAAGAGTTCTGGACGTACGTGGAAAAATCGTTTACCTGGACAGATCTTCCATCAAAATTTCCCACAAAGTATGTCCAGTTCCCAGTGTTCATAGCATCAGTTCATTCAAATTATGTTGACTGCAGTAGGTGGCTTGGTGATTTTATTCTTTCAAAGGTCAGCCAGCTTCTCTTTCCGTTGATATCGAGTTTTCTAGTACCAGTAATAAGGACTGTTTGTGCATTCCAGAGTGTTGACAATGAAATAGTGTTGTGGGAACCTAAAATGAAGGAGCAGTCACCTGGAGAGGGTACTGTGGATATTCTTCAGAAGTACCCTGTTCCTGAATGTGATATTTGGTTCATCAAGTTTTCCTGTGATTTTCATTACAATGCAGCTGCTATAGGAAATAGGGAAGGAAAAATTTTTGTTTGGGAACTTCAGTCGAGCCCCCCAGTTCTTATTGCAAGGCTGTCTCATGCCCAGTCGAAGTCTCCCATCAGACAGACAGCCATGTCCTTTGATGGAAGTAATTGCTGGGGATTGAAGAAGAAACAGCCTGGGGTTATGATTAGAGTGGAATCTGAAGAATTGGTGATTCTTGTGTTTTGGGTATTGGGTGTTTTGTTCACTTTGATTCTGGGGATGAGGAATGATGGAGCTCTAAAGCAACAGGGATCCGTAGCTCGCTCTGGGCGGGCTCATGGTTTCATATCAAGTTCATTCCGGGCCTTCTCTAGCTACATGAAGAACGTTTCTTCTGGTGCTTCGACTGTGGCACGGTCGGCTGCATCAGTGGCATCTTCTTTGGTGGATAAGGATGGTGAAGCAAAAGGATCCCAGGTGAACTGGGCTGGCTTTGACAAGTTAGAGAGGGATGACAATGTCATTCGACGGGTGCTTCTGTTGGGTTTTCGTTCCGGTTTCCAGATTTGGGATGTCGAGGAAGCAAATAATGTCCAAGTTCTTGTTTCTCGTTACGATGGTTCTGTTTTGTACATGCAAGTGTTACCCAGACCAATACTATCAATGAGATCAGGAGATAAGTTTGCAGAAAGTAGGCCATTGCTAGTACTTTCGGCTTCTGGTTCCATTGCTGCTGCTTTTAACATACAGGATCAATTAGCCACTTCTGGCAATGCAGCCATCTCGAAGGGCCAGGAACTAGTAGATGGGAATTTTATGCCTACTTTTGTTAGATTTTATTCGCTGAAGTCCCAAACTTACGTGGATGAGCTCAAATTTAGATCAGTCGTTTATTCGGTGAGATGCAGTCCCTTGGTTGTTGCCATTTCTCTGGCAACTCAGATACACTGCATCAATGCTACAACTTTGGAGAAGGAACATATAATTCTTACAAATCCTGTTGTTTCTGGTTTTCCTGGATCTGGAGGAGGTATAGGTTATGGACCCCTTGCAGTCGGACCTAGATGGCTGGCTTATAGTGGTAGTCCGATCACGGTGTCAAATACAGGACGAGTGATTCCACAGCATTTAAAACCTTCTGCTAGTTTTTCTCATTCTTCTTCAAATGGAAGTTTAGTTGCTCACTATGCAAAGGAATCGAGTAAACAACTTGCAGCAGGCATTGTTACGCTCGGTGACAAGGGTATTAAGAAACTGTCGAGGTATTACTCCGATCTCTTACCCGAAAGCTACAATTCTCTTCAATCAGGTACTCAGGGTATTGGAGCTCTTAATGGCCATGCGGCAGATACAGATAGTGTTGGAATGGTTATTGTGAAAGACATTGTCAGCAAAGTGATCATCACCCAGTTTAAGGCACATAAGAGCCCGATTTCTGCTCTATGCTTTAATCCGAGTGGCATCATCTTGGTAACGGCTTCTGTTCAGGGTCATAGCGTAAACGTTTTTAAAATTATGCCAAGTTCGTGCTCGGATTCATCTGCATCTTATAGCCATTTGTACAGACTGCAAAGAGGCTTCACTAACGCAGTCATACAAGACATCAGTTTCAGCTACGATAGCAACTGGATCATGATTAGTTCCTCTAGAGGGACGAGCCATCTCTTTGCTATAAACCCTTCTGGAGGGCAGGTGAATATCCCATCTGCTGACATTAGCTCTATTACTAGAAATGGCAGTCCTGTAGTTCCTGCACGACAAATCGTTCGACAAGTTGATTCTGGTTCGCGCGTGTCTAGTAAACAGAGCCAGTGTGCTACTGGTAGTCCACCTACACTTTCTCCAATTACTAGACTACACCATGGAAGTAATGGCTGGCGGGGCACTGTCAGTAGTGCTGCAGCAGCTGCAACTGGTCGAGTGGGTATTGTTTTGGGAGCTATTGCTTCAACTTTCCATGAATGCAAGGGAAATGCTTTGCACGTAGACAATGGATCGTCTGAGGCGAGGTACGACATATTAGTTTTTTCTCCATCTGGCAATATGATACAGTACGCATTGCGAGTCGGTTTAGATTCAACTCTAGTCTTGCCAAGATCTAGCACAGCTCTTGAATTAGCCCCCGAGCTGGATGCAAGACTAGTGGTTGAACCTATCCAGAAATGGAATATATCTCAAAAGCATAACTGTCGAGCTCAAGATAATAGCATAGACATATACGGTGACAGCGGAGGTTTTGATTGCAAGAAAAATTATTGTGAAGAAATGAATGGGAACTCTATTGTTCTTGAAGCTAGTGGCACTGTCTTGAAGGCAGAGACTTGTAGAGAGGAACAATATCACCTGTATATTTCAGAAGCGGAGCTGCAGATGCATGCTGCTCTTACTCCACTGTGGACAAAACCTGAGATATATTTTCAAGTGATGGCAAGAGATGGAGTTGAACGAGATGAAATAGATCGTTATGGAGAACTCGAAATCGAAAGGATTCCTACTCGTATGATCGAAGCTCGGTCAAAAGACCTGATTCCAGTTTTTGACCATCTTCAGCCGCCCAAATTTCCGCAGACAAGGTTGTTAAATAGTAGTAGCGACCCGAAATCTATCCGATCTGAAAATGGAAGGCAATCATGGAGGAATGTCACGATTCCTCACGGCTCTGTTATCGGAAACGGACCCGAAGGAACCGGTAGGCATGGTTACAAGATGGTGACAGAAACCAAGGGCACTGTAAATGAATATGAATGCCCAAGGTCACAGACCCAGCTTAATGATGTAAATAATTGTACAGAGAGCTTAAGCATGGAGTCTCAACCCAAGTCTGTAAATAATCATAAAAGTGGCCTGGGAGTGGAGAATCATTATGAAGACCACCAATGTGATGAGCTTGAGTAG 3921 43.92 MAKYSLGSEPVVGSLTPSRKREYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKLDELAMELRFDLFPTTWICSSLQSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKVSQLLFPLISSFLVPVIRTVCAFQSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGSNCWGLKKKQPGVMIRVESEELVILVFWVLGVLFTLILGMRNDGALKQQGSVARSGRAHGFISSSFRAFSSYMKNVSSGASTVARSAASVASSLVDKDGEAKGSQVNWAGFDKLERDDNVIRRVLLLGFRSGFQIWDVEEANNVQVLVSRYDGSVLYMQVLPRPILSMRSGDKFAESRPLLVLSASGSIAAAFNIQDQLATSGNAAISKGQELVDGNFMPTFVRFYSLKSQTYVDELKFRSVVYSVRCSPLVVAISLATQIHCINATTLEKEHIILTNPVVSGFPGSGGGIGYGPLAVGPRWLAYSGSPITVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSKQLAAGIVTLGDKGIKKLSRYYSDLLPESYNSLQSGTQGIGALNGHAADTDSVGMVIVKDIVSKVIITQFKAHKSPISALCFNPSGIILVTASVQGHSVNVFKIMPSSCSDSSASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPSGGQVNIPSADISSITRNGSPVVPARQIVRQVDSGSRVSSKQSQCATGSPPTLSPITRLHHGSNGWRGTVSSAAAAATGRVGIVLGAIASTFHECKGNALHVDNGSSEARYDILVFSPSGNMIQYALRVGLDSTLVLPRSSTALELAPELDARLVVEPIQKWNISQKHNCRAQDNSIDIYGDSGGFDCKKNYCEEMNGNSIVLEASGTVLKAETCREEQYHLYISEAELQMHAALTPLWTKPEIYFQVMARDGVERDEIDRYGELEIERIPTRMIEARSKDLIPVFDHLQPPKFPQTRLLNSSSDPKSIRSENGRQSWRNVTIPHGSVIGNGPEGTGRHGYKMVTETKGTVNEYECPRSQTQLNDVNNCTESLSMESQPKSVNNHKSGLGVENHYEDHQCDELE 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4817447 4832989 - CmoCh09G009220.1 Cmo09g00922 388924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00922 1306 MobiDBLite consensus disorder prediction 1292 1306 - -
Cmo09g00922 1306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 147 184 - -
Cmo09g00922 1306 SUPERFAMILY WD40 repeat-like 28 397 IPR036322 GO:0005515
Cmo09g00922 1306 Gene3D - 785 951 IPR015943 GO:0005515
Cmo09g00922 1306 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 436 1233 - -
Cmo09g00922 1306 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 436 1233 IPR045142 GO:0006914
Cmo09g00922 1306 MobiDBLite consensus disorder prediction 1272 1290 - -
Cmo09g00922 1306 Gene3D - 19 405 IPR015943 GO:0005515
Cmo09g00922 1306 SUPERFAMILY WD40 repeat-like 304 901 IPR036322 GO:0005515
Cmo09g00922 1306 SMART WD40_4 140 180 IPR001680 GO:0005515
Cmo09g00922 1306 SMART WD40_4 325 366 IPR001680 GO:0005515
Cmo09g00922 1306 SMART WD40_4 67 114 IPR001680 GO:0005515
Cmo09g00922 1306 SMART WD40_4 183 226 IPR001680 GO:0005515
Cmo09g00922 1306 SMART WD40_4 806 846 IPR001680 GO:0005515
Cmo09g00922 1306 SMART WD40_4 858 899 IPR001680 GO:0005515
Cmo09g00922 1306 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 228 - -
Cmo09g00922 1306 MobiDBLite consensus disorder prediction 1197 1226 - -
Cmo09g00922 1306 Pfam WD domain, G-beta repeat 811 840 IPR001680 GO:0005515
Cmo09g00922 1306 Pfam WD domain, G-beta repeat 194 226 IPR001680 GO:0005515
Cmo09g00922 1306 Pfam WD domain, G-beta repeat 143 180 IPR001680 GO:0005515
Cmo09g00922 1306 ProSiteProfiles Trp-Asp (WD) repeats profile. 147 189 IPR001680 GO:0005515
Cmo09g00922 1306 MobiDBLite consensus disorder prediction 1196 1242 - -
Cmo09g00922 1306 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 228 IPR001680 GO:0005515
Cmo09g00922 1306 ProSitePatterns Trp-Asp (WD) repeats signature. 167 181 IPR019775 -
Cmo09g00922 1306 MobiDBLite consensus disorder prediction 1272 1306 - -
Cmo09g00922 1306 Pfam Breast carcinoma amplified sequence 3 950 1186 IPR022175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00922 - - - bhj:120085734 1414.05
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01204 Cmo09g00922 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00922 Cmo-Chr9:4817447 Cmo11g01150 Cmo-Chr11:6580042 3.14E-152 dispersed
Cmo01g01204 Cmo-Chr1:9750385 Cmo09g00922 Cmo-Chr9:4817447 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g429 . . Bda07g00339 Bda09g00383 . Bpe08g01141 . . . . Cma01g01151 . . . Sed07g2655 . Cpe02g00750 Bhi09g01945 Tan01g4507 Cmetu04g3052 . Hepe01g1310 Mch11g1153 . . . . . . . . . . . . Lsi04g01243 . Chy04g01014 . . . . . . . Bma07g01315 Bma14g00356 . Cmo01g01204 Cmo09g00922 . . . . . . . . . . . . . Cla05g01538 Cam05g1645 Cec05g1651 Cco05g1688 Clacu05g1639 Cmu05g1534 Cre05g1644 . . . Cme04g00804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00922 Cmo_Chr09 FPKM 10.52752 11.858137 5.368481 6.287999 21.473326 19.651611 21.661047 4.689316 4.375018 5.408951