Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00929 ATGGAGGAATTTATTGTGGCAGTTCTCTCGATGCTGCTTGTTTTTGCGTTGGTTCCTCTGTTTCTGTGGAGACGCTATCAGGACTCCCGCTCAGATCATGCACATGAAGATGAGGATCAGGTTCCTCAGAGAGAAACTGTGGTTCGGGCCACTGCTGGTGGCCGTCGAATGCGTCGGAGACCTGCTACGGCTGCTAGTTCGTCGAATGCAGGGCCATCTCTGGAAGAAAGTGCGGATGGAAGTGATGAAGAAATGGCGGATGAATACAATGAAGGTCGAGTGTCAAAGAAGAAAGAAAAGAAGCGACAGGAGCGCGAGGCACAGAGACAGATGTCTTTAGTAAAAATTATTGTTTTGAAGGCCGAACAAGCTTCCCGCGACTCAAGGTGGACAAAACAAGACCGTTATGCAGAAATGCGGAGGAAGAAGGATGAGGAACGTGAGGAGCAGGAACGGTTACTGGAAGAAGAAGCCAAGGCACGGAAGGTCAAGGAGGAAGAGGCTGCTTCACTTGAGTTTGAGAAGTGGAAAGGGGAATTTTCAGTCGATGCTGAAGGTACGACGGAAGCTGATGTCGAAGGCGGAAATCAAGATTTGCTCTCTACTTTTGTGGAATATATAAAGAATCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAATTAAGAACTCAGGTAACCCAGATAATGGTTGTTGTATGCCGACTCTCTGGTGTTATGGATGATAGAGGCAAATACATATACATATCAAAGGATGAAATGCAAGCAGTTGCTGACTACATCAAGCGTCAAGGAAGGGTTAGCATTTCACATTTAGCTAGTAAGTCCAACCAGTTCATTGATTTGGAACCAAAAACCCAATTGGTTGAGGACATCAATGCTGAGGAGGTAACTGTCCCTTAA 909 45.65 MEEFIVAVLSMLLVFALVPLFLWRRYQDSRSDHAHEDEDQVPQRETVVRATAGGRRMRRRPATAASSSNAGPSLEESADGSDEEMADEYNEGRVSKKKEKKRQEREAQRQMSLVKIIVLKAEQASRDSRWTKQDRYAEMRRKKDEEREEQERLLEEEAKARKVKEEEAASLEFEKWKGEFSVDAEGTTEADVEGGNQDLLSTFVEYIKNHKCVPLEDLAAEFKLRTQVTQIMVVVCRLSGVMDDRGKYIYISKDEMQAVADYIKRQGRVSISHLASKSNQFIDLEPKTQLVEDINAEEVTVP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4853765 4858435 + CmoCh09G009290.1 Cmo09g00929 388931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00929 302 MobiDBLite consensus disorder prediction 87 107 - -
Cmo09g00929 302 MobiDBLite consensus disorder prediction 32 107 - -
Cmo09g00929 302 Pfam DDRGK domain 94 282 IPR019153 -
Cmo09g00929 302 Coils Coil 86 106 - -
Cmo09g00929 302 MobiDBLite consensus disorder prediction 128 148 - -
Cmo09g00929 302 SUPERFAMILY Winged helix DNA-binding domain 194 259 IPR036390 -
Cmo09g00929 302 SMART DDRGK_2 92 283 IPR019153 -
Cmo09g00929 302 Coils Coil 136 174 - -
Cmo09g00929 302 Gene3D - 198 251 IPR036388 -
Cmo09g00929 302 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 90 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00929 K23344 DDRGK1; DDRGK domain-containing protein 1 - csv:101212750 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01199 Cmo-Chr1:9715960 Cmo09g00929 Cmo-Chr9:4853765 3.03E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g457 Blo03g00579 . . . . . . . . . Cma01g01147 Cma09g00932 . Car09g00846 Sed04g3188 Cpe06g00750 Cpe02g00753 Bhi09g01935 Tan01g4516 Cmetu04g2882 . . Mch11g1161 . . . . . . . . . . Cone14ag1125 . Lsi04g01235 . . . . . . . Bpe11g00528 . . . . . Cmo09g00929 . . . Car16g00559 . . . . . . . . . Cla05g01528 Cam05g1637 Cec05g1641 Cco05g1674 Clacu05g1629 Cmu05g1525 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007655 1 2 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00929 Cmo_Chr09 FPKM 9.628524 11.754998 7.093737 7.55685 38.206085 28.832535 37.115448 8.098108 7.921359 7.006871