Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00932 ATGATCAATGGGGTTGATAGAGATTATCTCCGCCGCCGCTCATCGGTATCACCGGCGCCTGGTGTCTCACGGAGAGAGAGAGAGAGATTCATCAACATGATCAACAGAACTGTATTCTCTGCTTTGAAGAGATCGATTCTTCCATCGTCTTCGTCGCAATTACTCCCGTTCTTTTCCTCCTCCGCTTGTCGATCTGCTAGCACATTGGTTTTGGCGGAACACGATGGCGGATCCATCAATGCCGCTTCCGTTAGTGCTATAGCGGCTGCCGGTTCTTTGAGCAAAGACAGTTCGATTTCCGTCTTGTTGGCTGGCTCAGGGCCTTCGCTTCAGGAAGCTGCTGAACATGCTGCCTCTTGTCACCCATCTATTTCTCAGGTGCTTGTTGCTGATTCCGATACATTTACAAACCCCCTGGCAGAACCTTGGGCTCAATTAGTCCAATTGGTTCAACAGAGGAATGGATATTCTCATGTAATTGCGGCTTCAGGTTCCTTTGGGAAGAACATTCTTCCACGCGCTGCTGCTCTTTTAGATGTTTCTCCTGTTACCGATGTCGTTGCTATCTCTGAATCTCGTCAATTCGTGAGGCCCATATATGCTGGCAATGCGCTTTGTAAAGTTCGATACACCGGGGCTGACCCTTGTATGTTGACCATAAGATCTACATCATTCCCAGTGACCTCGAAATCAGTAGAGTCGACATCGAATAAGTCCCCTATAACTCAGGTCGATCTCTCAACATTTGGTGGAGATTCTATTGGAAAATCTAGATATGTAAAGCAAACATCTCAGGAAGCAGAACGACCCGATCTTGCGAATGCACGTGTTGTTGTCACGGGAGGACGTGGTTTAAAGAGTGCCGAGAACTTCAAAATGATAGAGAAGCTCGCAGCAAAGCTTGGTGCTGCAGTTGGTGCCACACGTGCTGCTGTTGATGCTGGATTTGTGCCCAATGATCTTCAGGTTGGACAAACTGGTAAAATTGTAGCACCAGAACTGTATATGGCTTTTGGTGTATCAGGAGCCATTCAACATTTGGCTGGGATCAGAGACTCTAAGGTTATTGTGGCTGTGAATAAGGATGCAGATGCGCCTATATTTAAGGTTGCTGACTATGGACTCGTTGGCGATCTTTTCGAGATTATACCAGAGTTGCTCGAAAAGCTACCCGAAAGTAAGTAA 1185 46.92 MINGVDRDYLRRRSSVSPAPGVSRRERERFINMINRTVFSALKRSILPSSSSQLLPFFSSSACRSASTLVLAEHDGGSINAASVSAIAAAGSLSKDSSISVLLAGSGPSLQEAAEHAASCHPSISQVLVADSDTFTNPLAEPWAQLVQLVQQRNGYSHVIAASGSFGKNILPRAAALLDVSPVTDVVAISESRQFVRPIYAGNALCKVRYTGADPCMLTIRSTSFPVTSKSVESTSNKSPITQVDLSTFGGDSIGKSRYVKQTSQEAERPDLANARVVVTGGRGLKSAENFKMIEKLAAKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGIRDSKVIVAVNKDADAPIFKVADYGLVGDLFEIIPELLEKLPESK 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4869948 4876035 + CmoCh09G009320.1 Cmo09g00932 388934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00932 394 CDD ETF_alpha 67 245 IPR033947 -
Cmo09g00932 394 Pfam Electron transfer flavoprotein domain 68 246 IPR014730 -
Cmo09g00932 394 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 67 233 - -
Cmo09g00932 394 SUPERFAMILY DHS-like NAD/FAD-binding domain 268 390 IPR029035 -
Cmo09g00932 394 SMART ETF_2 68 253 IPR014730 -
Cmo09g00932 394 Gene3D - 265 392 - -
Cmo09g00932 394 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 54 392 - -
Cmo09g00932 394 Gene3D HUPs 67 261 IPR014729 -
Cmo09g00932 394 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 54 392 IPR001308 GO:0009055|GO:0050660
Cmo09g00932 394 Pfam Electron transfer flavoprotein FAD-binding domain 271 351 IPR014731 -
Cmo09g00932 394 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 334 360 IPR018206 -
Cmo09g00932 394 PIRSF Electra_flavoP_a 64 394 IPR001308 GO:0009055|GO:0050660
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00932 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - csv:101217942 545.814
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00932 Cmo_Chr09 FPKM 10.228572 8.763217 6.75038 6.118922 4.951025 5.803362 4.477995 17.38456 16.593246 15.479334