Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00941 ATGACATCCATGGCGGCTTCTTCTTCTCAATCCTTTTGTTCTTTGATTCCCAGAACTGTTCTTCTTGTTTCCGTCCTGGTGTTTCTTTTTCCATCGCAACCAGAGGCTCTGAAATCGCCGTTTTCCCCTATCGACATGCTTTCATTGCTTCCCAGGCAGGTCTCATGGCCGATTCTCAACTATCTGAACAACGCCGACGATCTTCTTCCGACTTTCGTCGGAGCTGTCTCCTCTCCTGATAAGTCTATTCAATGGCAAGGGGCTTGCTTCGATAAGAACACCGCTTGGCTTGAATTTCATAACAATTCCGGCTCTGAATTTGGCGGTGGTACGCTTCATATAAAGGCTAGCAATGCACATAGTTGGACGTGTATGGATCTTTATATCTTTGCAACGCCGTATCGTGTGACGTGGGACTACTATTTCTTTTCCAGAGAACATACTCTTGAGTTTACAGAATGGGAAGGAAAACAAGAATTTGAATACGTTAAAGAGGCAGGGGTTTCAATTTTCCTCTTGCAAGCTGGGGTATTGAGAACCCTTCAAGCATTGTTCGACGTCCTCCCTTTGTTTGCAAATTCGGACTGGGGCGAGCAATCTAATATTAAGTTTCTTGAGAATCACATGGGTCCTACCTTTAAGGAACGTCGTCCCCCATGGACTACAAGTGTTAATGTTGATGATATTCACTCTGGAGATTTCTTAGCATTATCCAAATTTCGTGGTCCGTGGGGTGCTTTTGAGACTCTACAGAAGTGGGTTACTGGTTCATTTGCTGGTCATTCTGCTGTTTGCTTAAGGGATTCTGAAGGAAACTTGTGGGTTGCTGAATCTGGGCGTGGAACTGGAGTGGAGGATGATATTATTGATGTTTTACCATGGGATGAGTGGTGGAACTACGAACTCAACAACGATTCATCCAATCCCCACATTGCATTTCTTCCTTTGCATCCTGATTTGAGGGCGAAGTTGAATGAGACTGCTGCGTGGGAGTATGTAAGGAGCATGGTTGGGAAACCATATGGTTATCATAATTTGATATTTAGCTGGATCGACACCAACCATGGAAACTATCCACCTCCCTTGGATGCCCATCTGGTTGCTTCTGCTATGACAATATGGACACAAGTGAGGCCAACCCTTGCGGCAAACTTGTGGAATGAAGCTTTAAACATACGACTTGGAACAAAGGGCCTTGACCTTCCTGAGATTCTAGTTGAGGTTGAAAAGCAAGGGTCATCTTTTGGCGAACTACTGGCTATTCCTGAACAGGATGACTGGATCTATGCTGACGGGAAATCAGCATCGTGTGTTGCTTTTATCCTTGAAATGTACAAGGCGGCCGGGCTTTTTGGTCCACTTTCTAGCTCAATACAAGTCACAGAGTTCACAATAAAAGATGCATACACTCTCAACTTTTTTGAAAACAATTCAAGCCGCCTTCCGAAGTGGTGTAATGGTGGGGACGATGTCAAGCTTCCATATTGTCAGATTCTTGGAAAGTATCGAATGTATTTACCGGGATATAATAGCATTGAGCCCTATCAACATATGAATGAAAGGGATCGTGCAAAGAACATAGAATTTGCAAACTTTTCTACAAAATCTGGAGATTTTGCTGAGTATGATTCTGTAGCTGAGTGA 1644 43.8 MTSMAASSSQSFCSLIPRTVLLVSVLVFLFPSQPEALKSPFSPIDMLSLLPRQVSWPILNYLNNADDLLPTFVGAVSSPDKSIQWQGACFDKNTAWLEFHNNSGSEFGGGTLHIKASNAHSWTCMDLYIFATPYRVTWDYYFFSREHTLEFTEWEGKQEFEYVKEAGVSIFLLQAGVLRTLQALFDVLPLFANSDWGEQSNIKFLENHMGPTFKERRPPWTTSVNVDDIHSGDFLALSKFRGPWGAFETLQKWVTGSFAGHSAVCLRDSEGNLWVAESGRGTGVEDDIIDVLPWDEWWNYELNNDSSNPHIAFLPLHPDLRAKLNETAAWEYVRSMVGKPYGYHNLIFSWIDTNHGNYPPPLDAHLVASAMTIWTQVRPTLAANLWNEALNIRLGTKGLDLPEILVEVEKQGSSFGELLAIPEQDDWIYADGKSASCVAFILEMYKAAGLFGPLSSSIQVTEFTIKDAYTLNFFENNSSRLPKWCNGGDDVKLPYCQILGKYRMYLPGYNSIEPYQHMNERDRAKNIEFANFSTKSGDFAEYDSVAE 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4948804 4955009 + CmoCh09G009410.1 Cmo09g00941 388943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00941 547 PANTHER PLANT/F10M23-360 PROTEIN 24 521 - -
Cmo09g00941 547 PANTHER OS01G0793500 PROTEIN 24 521 - -
Cmo09g00941 547 Gene3D endopeptidase domain like (from Nostoc punctiforme) 228 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00941 - - - csv:101214437 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00316 Cmo-Chr4:1566081 Cmo09g00941 Cmo-Chr9:4948804 0 dispersed
Cmo04g01673 Cmo-Chr4:8490280 Cmo09g00941 Cmo-Chr9:4948804 4.51E-70 dispersed
Cmo04g01674 Cmo-Chr4:8492061 Cmo09g00941 Cmo-Chr9:4948804 9.59E-155 dispersed
Cmo09g00941 Cmo-Chr9:4948804 Cmo09g00943 Cmo-Chr9:4956386 3.03E-23 proximal
Cmo09g00941 Cmo-Chr9:4948804 Cmo09g00942 Cmo-Chr9:4955472 1.23E-99 tandem
Cmo01g01187 Cmo-Chr1:9641769 Cmo09g00941 Cmo-Chr9:4948804 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g487 . Blo03g01446 . Bda09g00394 . . . . . . . Cma09g00943 . Car09g00857 . . . . . . . . . . . . . . . . . . . Cone14ag1138 Cone15ag1156 Lsi04g01215 . . . . . . . . . . . . . Cmo09g00941 . . . . . . . . . . . . . Cla05g01499 Cam05g1617 . Cco05g1645 Clacu05g1601 Cmu05g1498 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000656 4 3 3 2 4 4 4 3 3 3 2 3 5 3 3 6 3 5 4 3 3 3 2 2 4 3 1 4 2 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00941 Cmo_Chr09 FPKM 13.112932 12.688727 7.461467 7.446481 7.256987 6.649024 8.301819 4.501013 3.88498 5.685288