Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00944 ATGATCGCCATAATCCTTCTTCTCATCACCATCTTCGTCTATCTCAGGCTTAGAACCACCTTCTTCTCCACCGCGGTGGCGGCGAAAAACCTTCCTCCGGGGCGGCTGGGGGTCCCATATATAGGCCAAAGCCTGAGCCTTCTACGAGCCATGCGAGCAAACTCGGCCGAGCAATGGCTGCAGCAGAGAGTGGCCAAGTATGGGCCAATTTCGAAGATGACCCTTTTCGGGAAACCGACGGTGTTTGTACATGGGGTGGCGGCGAACAAGGCAGTGGTGTTTTCAGGGGAGGAGGAGGCGGTGTCGAACCGGCAGACCGAGTCGTTGAGGCGGATCTTGGGAGAGAGGAATTTGACGGAGTTGAGTGGTGAGGATCATAAGAGGGTTAGAGGGGCATTGGTTTGGTTCTTGAGGCCTCAGAGCTTGAAAGGGTTTGTGGGGAAGATGGATGGAGAGGTTAGGAAGCATTTGAAGTTGCATTGGCATGGCAACAAGGAAGTCATTGTAGCACCATTGATGAAAACACTAACCTTTGACATCATATGCTCTCTCCTGTTTGGGATTGAAGAAGGGCCAACAAGAAAGAGCATAATAGAATGCTTCAAAACAATGGTGGATGGGATTTGGTCTGTTCCAATCAACCTGCCATTCACAAGGTACAGCCATAGCCTCAAAGCAAGTGCAAAAGTTCAACAGATATTGAAGCAGCTTTTGAAGGACAAGGCACAAAAAATGGAAGGAGAAGAAGAAGAAAAGGAAGAGGATAAGAACCTGATTACTTGTTTGCTTAGCATCAAGAACAAAGACAAAGAACAAGCTTTGAGTGAGGAGGAAATTGTGCACAATATCATCCTTCTATTGATTGCTGGACATGACACAACATCCATTTTGATTACTCTTATGCTTAGGGTTATGGCTACAAACCCAACTGTTTATGCAGCTGTTCTTCAAGAACATGAAGACATACTTAGAAGCAAGGAATGTGGGGAGGCCCTCACTTGGGAAGATGTTTCCAAGATGAAGTACACATGGAGAGTAGCATTGGAGACTTTGAGACTTTTCCCACCTGTCTTCGGAGGGTTTAGAGTGGCTCTCAAAGACATTCAATTAGGTGGATACACTATTCCAAAAGGATGGCAAATATTTTGGGCGGCATCAATGACCCATTTGGACGAGAAAATATTCAGAGACCCACAAAAGTTTGAACCAAGTAGATTTGATCAGAACCAGACGTCCATTCCACCACCCTTATCTTTCATCGCCTTTGGTGGAGGACCCAGAATTTGCCCTGGCTACGAGTTTGCAAAGCTTGAAACTCTTGTCACTATTCATTACATAATCACTCAGTTCACTTGGAAGCTCTCTTCACAAGACTTCTTGACCAGAGATCCAAGCTTGATGCCCAACAAAGGGCAAGACTACTTATTATCATCAAGTATTCAAGAGCCAACCCGCACGACACGAAAGAAACCTTGA 1476 46.0 MIAIILLLITIFVYLRLRTTFFSTAVAAKNLPPGRLGVPYIGQSLSLLRAMRANSAEQWLQQRVAKYGPISKMTLFGKPTVFVHGVAANKAVVFSGEEEAVSNRQTESLRRILGERNLTELSGEDHKRVRGALVWFLRPQSLKGFVGKMDGEVRKHLKLHWHGNKEVIVAPLMKTLTFDIICSLLFGIEEGPTRKSIIECFKTMVDGIWSVPINLPFTRYSHSLKASAKVQQILKQLLKDKAQKMEGEEEEKEEDKNLITCLLSIKNKDKEQALSEEEIVHNIILLLIAGHDTTSILITLMLRVMATNPTVYAAVLQEHEDILRSKECGEALTWEDVSKMKYTWRVALETLRLFPPVFGGFRVALKDIQLGGYTIPKGWQIFWAASMTHLDEKIFRDPQKFEPSRFDQNQTSIPPPLSFIAFGGGPRICPGYEFAKLETLVTIHYIITQFTWKLSSQDFLTRDPSLMPNKGQDYLLSSSIQEPTRTTRKKP 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4959270 4963907 - CmoCh09G009440.1 Cmo09g00944 388946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00944 491 PRINTS P450 superfamily signature 429 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS P450 superfamily signature 420 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PANTHER CYTOCHROME P450 26 5 456 - -
Cmo09g00944 491 Coils Coil 231 258 - -
Cmo09g00944 491 Pfam Cytochrome P450 32 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 Gene3D Cytochrome P450 22 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PANTHER OS07G0520300 PROTEIN 5 456 - -
Cmo09g00944 491 SUPERFAMILY Cytochrome P450 29 458 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 422 431 IPR017972 GO:0005506|GO:0016705
Cmo09g00944 491 PRINTS E-class P450 group I signature 384 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 429 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 419 429 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo09g00944 491 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00944 - - - csv:101212103 784.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00944 Cmo-Chr9:4959270 Cmo04g01189 Cmo-Chr4:6085173 3.03E-75 dispersed
Cmo19g00934 Cmo-Chr19:8618602 Cmo09g00944 Cmo-Chr9:4959270 7.63E-10 dispersed
Cmo09g00944 Cmo-Chr9:4959270 Cmo19g01090 Cmo-Chr19:9372526 9.99E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g494 . . Bda07g00357 Bda09g00396 . . . . . . . Cma09g00945 . Car09g00859 Sed10g2110 Cpe06g00761 . Bhi09g01887 Tan01g3346 Cmetu01g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00944 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00944 Cmo_Chr09 FPKM 2.872716 2.96664 43.874115 42.224724 2.513111 1.119814 2.322067 6.461596 5.527457 6.235654