Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g00953 | ATGGAGAAGAAAAGGAGGAGAAAAAGGGGCGCTGTCGTTATTCGTTGTGTTTACCTTTCTGAAGACGACGTCGTTTTCTCTGGTGGAGCGCCACTACTGCTCGACTCCCGATGGATCTCTCGTCTCCAAGCCCGCCCACGATCTACAACTGGATACAGCCGAATATCAATGGCCCTTTCCCGTGAGATTGATGCTCGTTTGAAGACGAAATGTGATAAGGTAGCTGATGCTTTTGTGATGGATGATATTGTTCTTGAGCAGATATTGGGAGTACTGATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATGACGATTTTCAGAAAACTGGGCTGAGCAAAAGGTGCATCCCACTAATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTCGCTTTCTGGGTTTTGTTTATATCTCTTTGACTTTTGTGTTTTTTCTCGCAATTCCGAATTTGTTTGGTAAGATTCTGGTATTGCTTCGTTTATGGAAGCCATGGATATTGCTTCGTTTGTATCCTGCTGGAATTTTGTCTTTCTTTCATGTTGTCAAGGGTTTTTTTATACGAGACGCATGTTTTGATCACTTAGCTTCATCCGAACTTGATTTTTGGCTATTTGTAAATTTCGGAGTTTTTGTTATGCCTTTCTCTGAATCCCGTCAGATTACCTGTTGTTCTGTTTGGTTTGAGCTTCATCCTAACTTGATTTTCGGCTATATCTTCATCCAAACAAAGTTCATGGTTGAATTAGACTTCCAGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAGAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGTCTGTTGATTTATGCTTTGCTTTTGGGGTATGTTCTGTTCTTAGTTTCTAAGAGTCGGTGTGTCTTAGTCTATTGTGTTGTTGTCAATGGATTCTGTGATGGCGTGTGA | 1221 | 42.26 | MEKKRRRKRGAVVIRCVYLSEDDVVFSGGAPLLLDSRWISRLQARPRSTTGYSRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYDDFQKTGLSKRCIPLMFSFLSSFFLPCSFDLFRAFLVFRFLGFVYISLTFVFFLAIPNLFGKILVLLRLWKPWILLRLYPAGILSFFHVVKGFFIRDACFDHLASSELDFWLFVNFGVFVMPFSESRQITCCSVWFELHPNLIFGYIFIQTKFMVELDFQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDRELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGLLIYALLLGYVLFLVSKSRCVLVYCVVVNGFCDGV | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5015254 | 5023210 | - | CmoCh09G009530.1 | Cmo09g00953 | 388955 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g00953 | 406 | TIGRFAM | SUI1_MOF2: translation initiation factor SUI1 | 267 | 371 | IPR005874 | GO:0003743 | |
Cmo09g00953 | 406 | Pfam | HAUS augmin-like complex subunit 4 | 84 | 119 | IPR029327 | GO:0051225|GO:0070652 | |
Cmo09g00953 | 406 | SUPERFAMILY | eIF1-like | 256 | 371 | IPR036877 | GO:0003743|GO:0006413 | |
Cmo09g00953 | 406 | Pfam | Translation initiation factor SUI1 | 287 | 360 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo09g00953 | 406 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 290 | 360 | IPR001950 | GO:0003743|GO:0006413 | |
Cmo09g00953 | 406 | CDD | eIF1_SUI1 | 289 | 371 | IPR005874 | GO:0003743 | |
Cmo09g00953 | 406 | Gene3D | - | 254 | 372 | - | - | |
Cmo09g00953 | 406 | PANTHER | PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG | 261 | 371 | - | - | |
Cmo09g00953 | 406 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 261 | 371 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g01180 | Cmo09g00953 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01180 | Cmo-Chr1:9608583 | Cmo09g00953 | Cmo-Chr9:5015254 | 1.80E-73 | dispersed | |
Cmo09g00953 | Cmo-Chr9:5015254 | Cmo19g00956 | Cmo-Chr19:8721835 | 4.66E-58 | dispersed | |
Cmo01g01179 | Cmo-Chr1:9599515 | Cmo09g00953 | Cmo-Chr9:5015254 | 9.19E-15 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g00953 | K03113 | - | csv:101202908 | 223.016 |