Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00953 ATGGAGAAGAAAAGGAGGAGAAAAAGGGGCGCTGTCGTTATTCGTTGTGTTTACCTTTCTGAAGACGACGTCGTTTTCTCTGGTGGAGCGCCACTACTGCTCGACTCCCGATGGATCTCTCGTCTCCAAGCCCGCCCACGATCTACAACTGGATACAGCCGAATATCAATGGCCCTTTCCCGTGAGATTGATGCTCGTTTGAAGACGAAATGTGATAAGGTAGCTGATGCTTTTGTGATGGATGATATTGTTCTTGAGCAGATATTGGGAGTACTGATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATGACGATTTTCAGAAAACTGGGCTGAGCAAAAGGTGCATCCCACTAATGTTCTCATTCCTCTCATCGTTCTTCCTTCCTTGTTCCTTTGATCTCTTTCGCGCGTTCTTGGTCTTTCGCTTTCTGGGTTTTGTTTATATCTCTTTGACTTTTGTGTTTTTTCTCGCAATTCCGAATTTGTTTGGTAAGATTCTGGTATTGCTTCGTTTATGGAAGCCATGGATATTGCTTCGTTTGTATCCTGCTGGAATTTTGTCTTTCTTTCATGTTGTCAAGGGTTTTTTTATACGAGACGCATGTTTTGATCACTTAGCTTCATCCGAACTTGATTTTTGGCTATTTGTAAATTTCGGAGTTTTTGTTATGCCTTTCTCTGAATCCCGTCAGATTACCTGTTGTTCTGTTTGGTTTGAGCTTCATCCTAACTTGATTTTCGGCTATATCTTCATCCAAACAAAGTTCATGGTTGAATTAGACTTCCAGATCCCATCTGCTTTCGATCCATTCGCCGACGCCAAGGATTCTGATGCCCCCGGAACTAAAGCTTATGTTCATATCCGCGTTCAGCAGAGGAATGGCAAAAAGTGCTTGACTACAGTTCAGGGTCTGAAGAAAGAGTTCAGCTACGAGAAGATCCTTAAGGACGTGAAGAAGGAATTCTGCTGTAATGGTAACGTTGTTCAAGACAGAGAATTGGGGAAGATAATCCAACTTCAAGGCGATCAACGCAAAAACGTGTCTCAGTTCCTTGTCCAGGCTGGTCTCGTTAAGAAGGATCAGATCAAAATTCATGGTCTGTTGATTTATGCTTTGCTTTTGGGGTATGTTCTGTTCTTAGTTTCTAAGAGTCGGTGTGTCTTAGTCTATTGTGTTGTTGTCAATGGATTCTGTGATGGCGTGTGA 1221 42.26 MEKKRRRKRGAVVIRCVYLSEDDVVFSGGAPLLLDSRWISRLQARPRSTTGYSRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYDDFQKTGLSKRCIPLMFSFLSSFFLPCSFDLFRAFLVFRFLGFVYISLTFVFFLAIPNLFGKILVLLRLWKPWILLRLYPAGILSFFHVVKGFFIRDACFDHLASSELDFWLFVNFGVFVMPFSESRQITCCSVWFELHPNLIFGYIFIQTKFMVELDFQIPSAFDPFADAKDSDAPGTKAYVHIRVQQRNGKKCLTTVQGLKKEFSYEKILKDVKKEFCCNGNVVQDRELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGLLIYALLLGYVLFLVSKSRCVLVYCVVVNGFCDGV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5015254 5023210 - CmoCh09G009530.1 Cmo09g00953 388955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00953 406 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 267 371 IPR005874 GO:0003743
Cmo09g00953 406 Pfam HAUS augmin-like complex subunit 4 84 119 IPR029327 GO:0051225|GO:0070652
Cmo09g00953 406 SUPERFAMILY eIF1-like 256 371 IPR036877 GO:0003743|GO:0006413
Cmo09g00953 406 Pfam Translation initiation factor SUI1 287 360 IPR001950 GO:0003743|GO:0006413
Cmo09g00953 406 ProSiteProfiles Translation initiation factor SUI1 family profile. 290 360 IPR001950 GO:0003743|GO:0006413
Cmo09g00953 406 CDD eIF1_SUI1 289 371 IPR005874 GO:0003743
Cmo09g00953 406 Gene3D - 254 372 - -
Cmo09g00953 406 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 261 371 - -
Cmo09g00953 406 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 261 371 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01180 Cmo09g00953 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01180 Cmo-Chr1:9608583 Cmo09g00953 Cmo-Chr9:5015254 1.80E-73 dispersed
Cmo09g00953 Cmo-Chr9:5015254 Cmo19g00956 Cmo-Chr19:8721835 4.66E-58 dispersed
Cmo01g01179 Cmo-Chr1:9599515 Cmo09g00953 Cmo-Chr9:5015254 9.19E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00953 K03113 - csv:101202908 223.016