Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00956 ATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGTTTGACATCGTCGGAATCTGAACCGCGGAGGAGTCTCCGTCGCCGGAATGTGAGGTACAACGTGGATTTTGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGTTGAAGCTTGTTGTGAAGTTGAATCAAGGTAGAGATGGAACTCATCTATCTCCGATGTCTCGACTTGCTAGGTCAGGAGCGCGTGATGCACACGCGCCGGAGTATGGTTCGTCTGCGTCCGAATGGGAAGATGACGAACCTGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGAGGCGGCGGCGGCGGCGGTGGTGGTGAGGAAGAAGATGAAGATGAAGATTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGTACTTAACAAGAACACCGCCATGGATGGATCTGTTGGAAGTGAGGAATATAATGAAGATTATGAACAAGAGAGATTGAGGAATGAAAGGGGAAGGAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCTGGGACTCCCTCAGATCGATCATCCGGGTTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAGCTTCAGAAGAAGGATACTTATGGTGTTTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGACTATCACGATGTCATTGAGCATCCTATGGACTTTGCCACCGTGAGGAATAAGTTGGCTAATGGATCATATTCAATTCTGGAACAGTTTGAGAGCGATGTTTTTCTTATATGCTCAAATGCAATGCAGTACAATTCACCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAAATTCGAGAGGGTAAGAATTGAAGTCGAACGCTCTGAGAAAGAGTTGAAATTGGAGCAGAGTACAAAATCGAATTCGTACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACCCTTGCTGCCACAGGAGATGTACAGAACGGTTCGAATCCGATCCACGGTGTTAACTGTGAGGTACCTAGCAATAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCTTTGATACTACTAATCAGGACAAGGCTGAAGAGCTCTTCTCAGGAAAGGGTATTCTAGGTAAATTGGGAAGAAAGACGTCTGTGCTTGACGACAACCGCCGTGCAACTTACAACATATCTAATTCACCTGCGCCACGATCCGAGTCAATATTTTCAACCTTTGAGGATGAAATAAGACAGCTTGTTCCGGTTGGGCTTCATGCGGAGTATGCCTATGCTAAGAGTCTGGCTCGATTTGCTGCAACACTTGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATCGAGCAGGTCGTACCTGTTGGATGTAAATTCGGACGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACTCCTATATTAATGTTTGAGAACCACAAGCAGAAGGAACTTGGTTTAAATCGTAACTTGCATTCTACCAGAGAATTTAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGATGGAACATTCTTTTAGTGCACCATGTACAGAAGTGAATGGATTTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCCTTAGGTCCACCACCCCAAATCCTGGTCCATCTCCACAGCAAAACCTGCAGACCAAGAATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTCGAGGTAAATTCCTTGCCTTCACCAAGACAAAATAAAGTTGATCTTGGTGTAGAGAAGCAACTTCCAACCAATTCGAATATGTCTACGTCTAGATCTAGAGATATGTCGTCGGTAAACTTAAATCTTGTTCAATCTGCTCCTTATAAACTGCCCGGTGTTAATGGCGTTGCAACTGGTGGACTGCCTAATGGAAAATTCCCGAGCAATTGTTTGAATAGTCCACGAGCTGCTTTATTGTCGTCTAGCTTGCCTTCTCAAACAGCCCCTGTGGCAACTTCCCATGGACAGGATCTGGGTCCTGGCAAGCCAGTACAGTTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCCTCATGTGATTCTCCGCCAGTTTTGTCATCAGTCCCTTCTGCTATGGGAGATGATTCGAATAATGCTGCAGCAGTAGCTTCTCGTGCGTGGATGTCGATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATACTTCCACTCCTAGAAGTCAAATCTCTGCAGATTCACTGTATAATCCAGCTCGGGAATTTCATCCGCAAATGGCACGAGCGTGGGGGGAGTTTCGTGCTGGAGGTAATCAGCTTCTATCTGAGAGGAACAATTTCCCTATGCAGCCATTTGTTTCACAAGCTTCTCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAATCCAGGCTGACATGTCTAAGTTCCAGTTGCAGTCGACATGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTTCCTCCCGACTTGAATATCGGTTTTCAATCACCCGGGTCTCCCGTGAAACAATCGTCTAGTGTTTTGGTCGACTCCCAGCAGCCAGACCTGGCCTTGCAACTTTAA 2763 46.11 MGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNVDFDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPMSRLARSGARDAHAPEYGSSASEWEDDEPERKPLKKRRIGGGGGGGGGEEEDEDEDYDDQIRGDENEDDDIDEVLNKNTAMDGSVGSEEYNEDYEQERLRNERGRRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSILEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNGSNPIHGVNCEVPSNNIDGQVEGSSSFFDTTNQDKAEELFSGKGILGKLGRKTSVLDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVPVGLHAEYAYAKSLARFAATLGPIAWKVASQRIEQVVPVGCKFGRGWVGEYEPLPTPILMFENHKQKELGLNRNLHSTREFRKDGKPSDTPLPKMEHSFSAPCTEVNGFARGSTLDGKSSFLRSTTPNPGPSPQQNLQTKNFTEVEKVKKQVEVNSLPSPRQNKVDLGVEKQLPTNSNMSTSRSRDMSSVNLNLVQSAPYKLPGVNGVATGGLPNGKFPSNCLNSPRAALLSSSLPSQTAPVATSHGQDLGPGKPVQLMRMMSERAPKQENSSNQSSCDSPPVLSSVPSAMGDDSNNAAAVASRAWMSIGAGGFKQVRDTSTPRSQISADSLYNPAREFHPQMARAWGEFRAGGNQLLSERNNFPMQPFVSQASLVPNEQQLQNRSMIYPQLIQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5032917 5039142 - CmoCh09G009560.1 Cmo09g00956 388958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00956 920 SMART bromo_6 211 319 IPR001487 GO:0005515
Cmo09g00956 920 MobiDBLite consensus disorder prediction 697 756 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 32 48 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 1 15 - -
Cmo09g00956 920 ProSiteProfiles Bromodomain profile. 230 300 IPR001487 GO:0005515
Cmo09g00956 920 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 920 - -
Cmo09g00956 920 CDD Bromodomain 218 314 - -
Cmo09g00956 920 SUPERFAMILY Bromodomain 200 316 IPR036427 GO:0005515
Cmo09g00956 920 MobiDBLite consensus disorder prediction 134 159 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 896 920 - -
Cmo09g00956 920 PRINTS Bromodomain signature 247 263 IPR001487 GO:0005515
Cmo09g00956 920 PRINTS Bromodomain signature 263 281 IPR001487 GO:0005515
Cmo09g00956 920 PRINTS Bromodomain signature 281 300 IPR001487 GO:0005515
Cmo09g00956 920 MobiDBLite consensus disorder prediction 578 602 - -
Cmo09g00956 920 Pfam Bromodomain 224 304 IPR001487 GO:0005515
Cmo09g00956 920 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 920 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 1 218 - -
Cmo09g00956 920 ProSitePatterns Bromodomain signature. 236 292 IPR018359 -
Cmo09g00956 920 Coils Coil 307 334 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 874 920 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 178 197 - -
Cmo09g00956 920 MobiDBLite consensus disorder prediction 730 756 - -
Cmo09g00956 920 Gene3D - 217 338 IPR036427 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00956 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1460.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01175 Cmo09g00956 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00956 Cmo-Chr9:5032917 Cmo11g01786 Cmo-Chr11:12559458 1.23E-79 dispersed
Cmo08g00238 Cmo-Chr8:1431683 Cmo09g00956 Cmo-Chr9:5032917 4.43E-10 transposed
Cmo01g01175 Cmo-Chr1:9581001 Cmo09g00956 Cmo-Chr9:5032917 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00956 Cmo_Chr09 FPKM 4.084682 5.171993 4.122289 4.626587 1.53884 1.323233 1.75562 5.922694 5.229396 5.30125