Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00962 ATGGTCTGGACGAGAGGCCCTGCCGTCGGCCGCGGCTCATCTGCCACCGTCTATTTGGCCACAGACGCCTCCTCCGGCCACCACTTCGCCGTCAAGTCCACCGACCTCTCTTCATCAGCGTTGTTGCAGAAGGAACACGCTCTTCTCTCCAAATTGAGCTCTCCATACCTTATCAACTGCCTAGGTTTCGACATTGAAACCGAAACCTTCAAGATTCCGGTGTTCAATCTGTTCATGGAGTATTTTCCGGAGGGGACGCTGTGGGATGCGATTCAGAGCAGCGGCGGCCGGATGGAGGAATCGGCGATCCGAGTGTTTTCGCGCCAGATTTTGAAAGGACTGGAGTACCTTCATGCTAATGGATTGGCGCATTGCGATATTAAGAGCCGGAATCTGTTACTGAGCGATGCAGGTTTAAAAATCGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAGTTTCCGAAAATGGAGTTAGGGATTTTTCTGGTTCGCCGGCGTTTATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCAGCGGATATTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGCGAACATCCGTGGGCGGATATAAAAGATCCGGTGTCGGCGTTGTATCGGATTGGATTTACCGGCGAGTTGCCGGAGGCTCCACGGTGGTTATCGGAGTGGGCGAGGGACTTTGTCGCTAAGTGTTTGATAAAAGTCCCGAAAGAAAGATGGACTGCGAAACAGCTTCTTGAGCATCCGTTTCTTCAGGAATTTGATTCCGAGTCGGAAATTGAATCTTCGAGGATGAAAACGGTGAATTCTTCTCCGAGGTGTGTTTTGGATCAAAGCTTTTGGGATTCAATGGAAGATTCAAAGACTCCATTGAAGGTAACGCATCAAGCTTCGTTGGAGGATTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCGTCCGATTGGGACTTGGAAGGGGACGATGGAGATTGGATTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATTTTTCAGCTACAGTTGAAGAAGAAGAAGAGCTGGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTCATATGATGATGATTCTGGTATTATGAACAATGGGAGAGGAGGATTAGAAATGGAAATTGGGAGATTTGGAGATCTTCATCTTCTGTTGTTTCATTGCCTCAAAGATTCATGGTTTTGA 1263 47.82 MVWTRGPAVGRGSSATVYLATDASSGHHFAVKSTDLSSSALLQKEHALLSKLSSPYLINCLGFDIETETFKIPVFNLFMEYFPEGTLWDAIQSSGGRMEESAIRVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDAGLKIADLGCAKFVDGVSENGVRDFSGSPAFMAPEVARGEEQGFPADIWAFGCTVIEMATGEHPWADIKDPVSALYRIGFTGELPEAPRWLSEWARDFVAKCLIKVPKERWTAKQLLEHPFLQEFDSESEIESSRMKTVNSSPRCVLDQSFWDSMEDSKTPLKVTHQASLEDCPAERIRSLAGNLSSDWDLEGDDGDWILIRNNGVGGGSHGNGSVSSDFSATVEEEEELEILNLEFEENSVLFCSYDDDSGIMNNGRGGLEMEIGRFGDLHLLLFHCLKDSWF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5072083 5073399 - CmoCh09G009620.1 Cmo09g00962 388964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00962 420 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00962 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cmo09g00962 420 CDD STKc_MAPKKK 3 258 - -
Cmo09g00962 420 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 352 - -
Cmo09g00962 420 SUPERFAMILY Protein kinase-like (PK-like) 6 302 IPR011009 -
Cmo09g00962 420 Gene3D Transferase(Phosphotransferase) domain 1 3 317 - -
Cmo09g00962 420 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g00962 420 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cmo09g00962 420 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 352 - -
Cmo09g00962 420 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00962 Cmo-Chr9:5072083 Cmo11g01890 Cmo-Chr11:13141047 3.41E-103 dispersed
Cmo01g01167 Cmo-Chr1:9545207 Cmo09g00962 Cmo-Chr9:5072083 0 wgd
Cmo02g00180 Cmo-Chr2:852639 Cmo09g00962 Cmo-Chr9:5072083 2.84E-102 wgd
Cmo03g00571 Cmo-Chr3:5572843 Cmo09g00962 Cmo-Chr9:5072083 1.09E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74582 PF00069 Pkinase 2.40E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00962 K20716 - bhj:120084748 636.336