Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo09g00974 | ATGGAATACAATGAAGCCATGAAACTCTCTGAAGATATCAATGGCATGATTTCTGGGAGAAGTTCTGCTTCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCGGAGAAAGAGATGAATCGACGCAGGGATATGATAGCGAATTTGAGATCGAAAGCTAACCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGAGATAGCTTACTTGGTCCAGAAATAAAGCCAGCAGAGAATAGGACGGAAGGCTTAGACAACCGAGGCCTACTCGAGCAAGATGAAGGCCTCGAGAAACTGGAAGGGACTATAATGAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTAGCCTTCACACGAGACTTATCGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGAGAGTGCAGAAGAGGCTGGCAATAATGAACAAGCGGACCAAGGGTGGATGCACTTGCATGTCAATGATTTCATCAGTTGTTGGAATTGTCGTTCTCATCACTCTCATATGGCTACTCATCAAGTATTTGTAA | 639 | 43.82 | MEYNEAMKLSEDINGMISGRSSASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASTLNMSNFANRDSLLGPEIKPAENRTEGLDNRGLLEQDEGLEKLEGTIMSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKRLAIMNKRTKGGCTCMSMISSVVGIVVLITLIWLLIKYL | 212 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5158698 | 5162529 | + | CmoCh09G009740.1 | Cmo09g00974 | 388976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo09g00974 | 212 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 3 | 204 | - | - | |
| Cmo09g00974 | 212 | CDD | SNARE_Qc | 121 | 176 | - | - | |
| Cmo09g00974 | 212 | Gene3D | - | 118 | 180 | - | - | |
| Cmo09g00974 | 212 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 116 | 178 | IPR000727 | - | |
| Cmo09g00974 | 212 | SUPERFAMILY | SNARE fusion complex | 120 | 177 | - | - | |
| Cmo09g00974 | 212 | SMART | tSNARE_6 | 110 | 178 | IPR000727 | - | |
| Cmo09g00974 | 212 | PANTHER | SYNTAXIN | 3 | 204 | IPR045242 | - | |
| Cmo09g00974 | 212 | Pfam | SNARE domain | 153 | 203 | IPR000727 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo09g00974 | Cmo16g00959 | CCT | |
| Cmo01g01156 | Cmo09g00974 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g00974 | Cmo-Chr9:5158698 | Cmo16g00959 | Cmo-Chr16:6354364 | 4.92E-94 | dispersed | |
| Cmo01g00984 | Cmo-Chr1:6509852 | Cmo09g00974 | Cmo-Chr9:5158698 | 8.11E-10 | transposed | |
| Cmo17g00043 | Cmo-Chr17:213771 | Cmo09g00974 | Cmo-Chr9:5158698 | 1.13E-07 | transposed | |
| Cmo01g01156 | Cmo-Chr1:9455895 | Cmo09g00974 | Cmo-Chr9:5158698 | 2.78E-138 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo09g00974 | K08503 | - | csv:101208669 | 347.821 |