Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00982 ATGCCTGAGAAATCGAGCCACAATGTTGTTTCAGAGCCTCGTTTGGTGGCTAGAAAGTTCCTGGCTAGGCCTCAGCATGAAGGGATGGGTGCCATTGTTCGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTTGACCCTTTTCTGGTTTTGGATGAGTTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACCTACATGTTACAGGGAAGTGTGACACATGAAGATTTTGAAGGCCACAAGGGAACAATAGGAGCAGGTGACTTGCAGTGGATGACTGCAGGTAGAGGTATTGTACATTCAGAAATGCCTGCAGCCCAAGGTACCCAAAGGGGCCTCCAGCTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAACCAAACTACCAAGAAGTTTCAAGCAAGGAAATCCCAGAAGCTACCAAAGATGGAGTGCAAGTGAAAGTAATAGCCGGTGAAGCATTGGGAGCAAAGTCACCAATCTACACAAGAACACCAACCATGTATTTAGACATCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCCGATCCCATCGTCCTGGAACGCGTTTGTTTACGTTCTTGAGGGTGAAGGTATCTTCGGTAGTTCGAAGGCGACGTCGACGACAGCACATAACCTTCTTCTGCTCGGGTTCGGGGACGGTTTAGAGGTATGGAATAAGTCAGGCAAGGCTCTGAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGGCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAGGAAATTGACCAAACAATTGATGATTTTGATAATTATACCAATGGGTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCAATTTCTCTTGGGTTCTAA 906 46.14 MPEKSSHNVVSEPRLVARKFLARPQHEGMGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGAGDLQWMTAGRGIVHSEMPAAQGTQRGLQLWINLSSKNKMIEPNYQEVSSKEIPEATKDGVQVKVIAGEALGAKSPIYTRTPTMYLDITLKPKAHLQQPIPSSWNAFVYVLEGEGIFGSSKATSTTAHNLLLLGFGDGLEVWNKSGKALRFILVGGEPLSEAVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAAISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5209836 5216211 + CmoCh09G009820.1 Cmo09g00982 388984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00982 301 PANTHER - 3 299 - -
Cmo09g00982 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cmo09g00982 301 Pfam Pirin 34 126 IPR003829 -
Cmo09g00982 301 PANTHER PIRIN-RELATED 3 299 IPR012093 -
Cmo09g00982 301 PIRSF Pirin 12 292 IPR012093 -
Cmo09g00982 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Cmo09g00982 301 CDD cupin_pirin_C 176 252 - -
Cmo09g00982 301 CDD cupin_pirin_N 33 128 - -
Cmo09g00982 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cmo09g00982 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo09g00982 Cmo16g00975 CCT
Cmo01g01145 Cmo09g00982 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00982 Cmo-Chr9:5209836 Cmo14g01545 Cmo-Chr14:12339913 1.44E-14 dispersed
Cmo16g00975 Cmo-Chr16:6636999 Cmo09g00982 Cmo-Chr9:5209836 2.49E-161 transposed
Cmo01g01145 Cmo-Chr1:9388579 Cmo09g00982 Cmo-Chr9:5209836 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00982 K06911 - csv:101216351 577.785