Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g00991 ATGGGTTTCTTAGCTAACTTGTTCTTTCATGACCCTTCTTCTTCCTCTGTGAGCTCTGCTGCTCACTTTCTCCTTGAACCCATTTTAGCTCATGGCTTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTTGTTCTGTTCTTCTCATGGGTTAGCTTTAAGTTGAAGGCAGGCTATGGGGGATGTCAAAGAGAGACGAGGTGTTTGTACTTTAAGGGAATGTTCATATGCTGCCTCGTTGTTTCTGTTTTCAACCTTGTTTTGTTTTCTCTTGGCTGCTTTTACTGGTATAGAAATGGATGGTCTGATGAAAATATGGTGACCCTTTTGGATTTTGGGTTGAAAGCACTTGCATGGAGCACGGTTTCCTTTTGTTTACATTCTCATGTTTCCAAAACTGGAAAGGCAAAGGTTGCTAGTCATTTGAGAGTCTGGTGGGTTTCTTACTTAGCTGTTTCTTGCTACTGCCTTGCTGTGGACTCTGTTCTTTATGGACAAACTCATTTCTTGTCCATTAGATACTTGGTTTCTGATGTTGTGTCGGTTGTCTCTGGTTTGTTGATCATATATGTTGGGTTCTTTGGGAAGAGTGTGAGTGAACAAGACCCTCTTGAAGAACACCTTTTAAATGGTGAAACTACTCTCAGTAATGGCATCGTCGATGGCGTCGTTGAGCTGAAGAACTTGAAAGGAGATGAAACTGTGACCCCTTATGAGACTGCTGGGATTTTCAGTATCCTTTCATTCTCTTGGATGGGTGCTTTGATTGCAGCTGGAAATAAGAAGGCATTAGACCTTGAGGATATTCCTCAACTTGCAAGCCGTGATGCTGTTTCTCGGACCTTTCATATTCTCAGAAACAAGCTTGAGTTGGAGTGTGGAACAGTTAACAGAGTCACCACTTTTTCTATGGTCAAGGGTTTACTCTACTCAGCTTGGAAAGAAATAGCCTTAACTGCTGCTCTTGCATTCATTTATGCATTGGCTACTTATGTTGGCCCCTATCTTATAGACACTTTTGTTCAATATCTCAACGGTCAGCGAGATTTCGAAAGTGAGGGCTATGTTTTGGTCTGTGTTTTTTTCGTAGCGAAACTCGTGGAGTGTCTCGCAAAGAGGAATTGGTTCTTTAGGGTACAACAAGTCGGAATAAGGATTCGAGCAGCATTGGTTGCAATGATCTACAACAAGGGTCTGACTCTTTCTTGCCAGTCGAGGCAACAGCATACATGCGGAGAGATTATCAACTTCATGACCGTAGATGCCGAGCGGGTCGTTGATTTCAGTTGGTATATACACGATGTTTGGCTGGTGGTTTTGCAAGTTGGATTGGCCTTGTTGGTTTTGTATAAGAAACTTGGTCTTGCTTCCATTTCAGCTTTTGTTGCAACTATAGCTGTTATGTTGATAAATATCCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATAATGGAGTCAAAAGACAAAAGGATGAAGGCTACAGCTGAAATCTTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAGATGAAGTTCCTATCTAAGATATCCGAACTTCGGAACATCGAGGCGGGATGGTTAAAGAAGTTCCTTTATACATTGTCAGCTACGACGTTTGTCTTTTGGGGTGCACCAACATTTGTGTCTGTGGTAACTTTTGGGACATGTACGCTTGTGGGGATCCCATTAGATTCTGGCAAAGTATTATCCGCGCTTGCAACGTTTAGGATTCTTCAAGAACCAATCTACGGTCTTCCTGACACGATCTCAATGGTTGTTCAAACGAAAGTTTCGCTTGATAGAATAGTGTCGTTCCTTCGTCTTGACGACTTCCAATCTGATATTATAGAGAGGCTTCCAAGGGGGAGTTCTACTACAGCAGTTGAGATTATCAATGGGAACTTTTCTTGGGATGATTCGAGTTCTTCGAACCTGACGTTGCAAGATATCAATGTCAAAGTGGAACATGGCATGAGAGTAGCTGTTTGTGGTACGGTTGGGTCGGGCAAGTCCAGCTTGCTATCTTGCATCTTGGGAGAGGTACCTAAACTATCAGGGAACCTGAGGGTGTGTGGTAGTAAGGCTTATGTAGCTCAGTCGCCATGGATACAGAGTGGAAAGATTGAGGAGAATATACTTTTTAGCAAAGAAATGGACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGCCTAGAAAAGGACCTTGAAATTCTTGCATTTGGCGACCAGACGGTAATAGGAGAAAGAGGAATCAATTTAAGTGGTGGACAGAAGCAAAGAATTCAAATTGCTCGAGCCTTGTACCAAGATGCTGATATTTACTTGTTTGATGATCCCTTTAGTGCAGTTGATGCTCATACAGGTTCTCATCTCTTCAAGGAATGTCTCCTTGGTGTTCTGAATTCAAAAACAGTCATTTATGTCACTCATCAAGTAGAATTTTTACCAGCTGCAGATCTTATCTTGGTCATGAAAGATGGAAAAATTGTTCAATCTGGAAAGTACGATGAAATTCTTCGTTCTGGAACCGACTTTATGACACTCGTTGGCGCACACGAGGAAGCATTATCCACCATTAATTCTGTGGAAGGAGATGCTTCTGGAAAATCTGCAAGCAAAGAAGATGGGTCTATGAGTAATACTAATGGCATTACATATGAGGAAGATAAAACAGATACACAAGATGGGAAGGGAGTTGATGAAACTAAGTCAAAAGGGCAGCTTGTACAAGAAGAAGAAAGAGAGAAAGGAAAAGTTGGATTTTCAGTGTACTGGAAATATACCAAGTATGCTTATGGTGGAGCTCTTGTGCCTATTATATTGCTTGCTCAGGTTCTCTTTCAGATTCTCCAAATTGGAAGTAATTACTGGATGGCATGGGCTACTCCTGTTTCAGATGATATGGAGCCTCCTGTTTCGACCTCTCGATTGATTATCGTCTATGTTGCTTTGGCCATTGGAAGCTCTTTGTGTGTCTTCTTGAGATCAGCCCTTCTTGTGACGGCTGGTTTTAAAGCAGCAACTGAACTCTTCGTTAAAATGCACACGAGCATCTTTCGGGCTCCCATGTCGTTCTTCGATTCTACTCCGAGTGGAAGAATCCTCAATAGAGCCTCCACAGACCAAAGTGCCATTGATATGGATATACCATTTCGAGTTGGGGCCTTCTGCTTCAGTCTGATTCAAATCCTAGGAACCATTGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATCATCTTTATCCCTGTGATGGCTTTATGCATCTGGTATGAGCAATATTATATTCCATCAGCACGAGAGCTATCCCGGTTGATTGGAGTATGCAAAGCTCCAGGGATTCAACTGTTCTCCGAAACGATTTCTGGATCAACAACTATTAGAAGCTTTGATCAAGAGTCAAGATTCCAGGACACCAATATGAAACTGACAGATGCATACTCTCGACCCAAGTTCCACACAGCTGCAGCAATGGAATGGCTCTGCTTCCGTCTCGATTTATTGTCTTCGATCACATTCGCCTCGTCTTTGATTTTCTTGGTATCTATCCCTGTGGGAGTCATTGATCCAGGCATTGCTGGCTTGTGTGTAACCTATGGACTTAACCTCAATATGTTGCAAGCTTCGCTAATATGGAACCTTTGCAATATGGAGAACAAAATTATATCAGTGGAGAGAATATTTCAATATACTTCAATCCCTAGTGAGCCACCTCTAGTTATCGAGGAAAACCGACCGGATAGTAGCTGGCCAACGTTCGGAGAAGTTGAACTTCACAACCTGCAGGTTCGCTATGCACCTCAGCTACCTCTTGTGTTGCAAGGTATTACATGCACTTTTCCAGGAGGAAAGAAAACAGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAGACACTTTTTCGGATAGTCGATCCCGTAGCAGGTCATATTGTGATAGATAACGTCAACATAACAACGATAGGACTTCATGATTTGCGGTCAAAACTCAGTATCATCCCTCAGGATCCTACTATGTTTGAAGGCACTGTGCGGAGCAATCTCGATCCCCTTGAAGAATATGCAGATGAAGACATTTGGGAGGCACTGGATAAATGCCTACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAGCTGGATTCAGCAGTTAGTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTAGTTTGCCTTGGTCGAGTGCTACTCAAGAAGAGTAAGGTGTTGGTCCTTGATGAAGCTACTGCATCTGTCGATACAGCTACGGATAACTTGATTCAACAGACTCTACGACAACATTTTTCCGACTGTACTGTCATTACGATTGCACATCGAATAACCTCAGTCCTTGACAGTGACATGGTCTTGCTTCTAAGTCAAGGACTCATTGAGGAGTATGACACCCCCACAAGATTGCTAGAAGATAAGTCATCCTCGTTTTCTCAACTAGTTGCAGAGTACACGCAAAGATCGGATTCTCAATGA 4509 42.63 MGFLANLFFHDPSSSSVSSAAHFLLEPILAHGLSGLAHLVLLLVLFFSWVSFKLKAGYGGCQRETRCLYFKGMFICCLVVSVFNLVLFSLGCFYWYRNGWSDENMVTLLDFGLKALAWSTVSFCLHSHVSKTGKAKVASHLRVWWVSYLAVSCYCLAVDSVLYGQTHFLSIRYLVSDVVSVVSGLLIIYVGFFGKSVSEQDPLEEHLLNGETTLSNGIVDGVVELKNLKGDETVTPYETAGIFSILSFSWMGALIAAGNKKALDLEDIPQLASRDAVSRTFHILRNKLELECGTVNRVTTFSMVKGLLYSAWKEIALTAALAFIYALATYVGPYLIDTFVQYLNGQRDFESEGYVLVCVFFVAKLVECLAKRNWFFRVQQVGIRIRAALVAMIYNKGLTLSCQSRQQHTCGEIINFMTVDAERVVDFSWYIHDVWLVVLQVGLALLVLYKKLGLASISAFVATIAVMLINIPLGKLQEKFQDKIMESKDKRMKATAEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSATTFVFWGAPTFVSVVTFGTCTLVGIPLDSGKVLSALATFRILQEPIYGLPDTISMVVQTKVSLDRIVSFLRLDDFQSDIIERLPRGSSTTAVEIINGNFSWDDSSSSNLTLQDINVKVEHGMRVAVCGTVGSGKSSLLSCILGEVPKLSGNLRVCGSKAYVAQSPWIQSGKIEENILFSKEMDRERYKRVLEACCLEKDLEILAFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGVLNSKTVIYVTHQVEFLPAADLILVMKDGKIVQSGKYDEILRSGTDFMTLVGAHEEALSTINSVEGDASGKSASKEDGSMSNTNGITYEEDKTDTQDGKGVDETKSKGQLVQEEEREKGKVGFSVYWKYTKYAYGGALVPIILLAQVLFQILQIGSNYWMAWATPVSDDMEPPVSTSRLIIVYVALAIGSSLCVFLRSALLVTAGFKAATELFVKMHTSIFRAPMSFFDSTPSGRILNRASTDQSAIDMDIPFRVGAFCFSLIQILGTIAVMSQVAWQVFIIFIPVMALCIWYEQYYIPSARELSRLIGVCKAPGIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLVSIPVGVIDPGIAGLCVTYGLNLNMLQASLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDSSWPTFGEVELHNLQVRYAPQLPLVLQGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNVNITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCLLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLEDKSSSFSQLVAEYTQRSDSQ 1502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5263363 5270273 + CmoCh09G009910.1 Cmo09g00991 388993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g00991 1502 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Cmo09g00991 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00991 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 853 IPR027417 -
Cmo09g00991 1502 MobiDBLite consensus disorder prediction 891 914 - -
Cmo09g00991 1502 CDD ABCC_MRP_domain2 1257 1477 - -
Cmo09g00991 1502 Pfam ABC transporter transmembrane region 321 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00991 1502 Pfam ABC transporter transmembrane region 942 1184 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00991 1502 Gene3D - 1242 1495 IPR027417 -
Cmo09g00991 1502 SMART AAA_5 658 831 IPR003593 -
Cmo09g00991 1502 SMART AAA_5 1285 1478 IPR003593 -
Cmo09g00991 1502 Pfam ABC transporter 1276 1424 IPR003439 GO:0005524
Cmo09g00991 1502 Pfam ABC transporter 649 783 IPR003439 GO:0005524
Cmo09g00991 1502 SUPERFAMILY ABC transporter transmembrane region 939 1241 IPR036640 GO:0005524|GO:0016021
Cmo09g00991 1502 SUPERFAMILY ABC transporter transmembrane region 307 608 IPR036640 GO:0005524|GO:0016021
Cmo09g00991 1502 ProSitePatterns ABC transporters family signature. 756 770 IPR017871 GO:0005524
Cmo09g00991 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo09g00991 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1485 IPR027417 -
Cmo09g00991 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1493 IPR003439 GO:0005524
Cmo09g00991 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 854 IPR003439 GO:0005524
Cmo09g00991 1502 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 126 1501 - -
Cmo09g00991 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 126 1501 - -
Cmo09g00991 1502 MobiDBLite consensus disorder prediction 866 914 - -
Cmo09g00991 1502 CDD ABC_6TM_ABCC_D2 940 1234 IPR044726 GO:0140359
Cmo09g00991 1502 Gene3D - 614 871 IPR027417 -
Cmo09g00991 1502 CDD ABCC_MRP_domain1 630 831 - -
Cmo09g00991 1502 MobiDBLite consensus disorder prediction 866 890 - -
Cmo09g00991 1502 Gene3D ABC transporter type 1, transmembrane domain 294 612 IPR036640 GO:0005524|GO:0016021
Cmo09g00991 1502 Gene3D ABC transporter type 1, transmembrane domain 902 1240 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g00991 - - K05666 csv:101213946 2533.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01910 Cmo-Chr4:9742902 Cmo09g00991 Cmo-Chr9:5263363 1.29E-14 dispersed
Cmo06g01204 Cmo-Chr6:9150846 Cmo09g00991 Cmo-Chr9:5263363 0 dispersed
Cmo08g00046 Cmo-Chr8:239315 Cmo09g00991 Cmo-Chr9:5263363 0 dispersed
Cmo09g00991 Cmo-Chr9:5263363 Cmo17g01323 Cmo-Chr17:10387653 0 dispersed
Cmo01g01138 Cmo-Chr1:9356860 Cmo09g00991 Cmo-Chr9:5263363 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g632 . . . . . . . . . . . . . . . . Cpe02g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00991 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g00991 Cmo_Chr09 FPKM 0.0 0.0 3.09416 3.42539 1.778528 0.941119 1.003627 0.0 0.0 0.0