Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01002 ATGTCCCCTTTGATTTTGCGACCCCGATTCGTTTCCCTGCTGAAGAATCGCCATGGTCGTCTTATGAGCTCCGATCTCGCTTCGACCCCTTCCAAAGATGCGATCAATGCGTCTCAGAAGCTTATCTCCGATCAGATTCCACCTGATGTTCAAGGCCCTACTGGTTCTTCTTCTTCTTCTTCTACCACTAGTAAGCCTTGGAATTTCCTTAAGTATAGTTTGATTGGTGCTCTCACAGGAGCAACTGCGGTTGCTGGTTACGCCAGCTATGCCTATACTTGCGATGAAATTGAAGAGAAGGCAAAAGCTCTTCGTCGTTCTGCTAGTCATACAGCCGCGGACGATGCTTCCAGTGTCGAGAAAGTTCAGGGCATGCTATACTCCACGATAATGTCAGCTCCTGCTAAACTCATTGACGTTTACCTGGATTTGAGGAAGGCAATTGAAAAGCAAGTTAAAGGTTATACTGAACCCAATGCGGAAATGCTTCTTCCAGAATTGCATCCCATGGAACGGCATGTGTTTACGCTTGTTCTAGATCTAAACGAGACTCTAGTATACTCTGATTGGACGCGAGAAAGAGGCTGGCAGACGTTTAAAAGACCTGGAGTTGATTCTTTCTTGGAACATCTTGCCCAGTTTTATGAAATTGTTATATACTCTGATCAATCAAATATGTATGTTGATCCTGTCATTGATAGGTTGGATCCCAAGCATTGCATACGATATAGGTTGTCAAGAGCAGCTACAAAGTATGAGAATGGAAAGCATTACAGAGACCTCTCAAAGCTTAACAGGGATCCCAGGAAGATTATTTATTTGAGTGGCCATGCACTTGATAGTAGTCTACAACCAGAAAACTCTGTTCCAATAAAGCCATGGAAGTGTGAGGCAGATGACACAGCTCTTCTTGATTTTATACCATTTCTTGAATTTGTTGCACGAAATAGTCCAGCTGACATCAGACAAGTACTTGAATCATATAAAGGATGCGACATTCCAACAGAATTTATAAGACGTTCTAAAGAGCATCAAAGGCGGATTCAAGAACAGAAGCAGCAGGGGCGAATATGGAAACGTTGA 1083 43.12 MSPLILRPRFVSLLKNRHGRLMSSDLASTPSKDAINASQKLISDQIPPDVQGPTGSSSSSSTTSKPWNFLKYSLIGALTGATAVAGYASYAYTCDEIEEKAKALRRSASHTAADDASSVEKVQGMLYSTIMSAPAKLIDVYLDLRKAIEKQVKGYTEPNAEMLLPELHPMERHVFTLVLDLNETLVYSDWTRERGWQTFKRPGVDSFLEHLAQFYEIVIYSDQSNMYVDPVIDRLDPKHCIRYRLSRAATKYENGKHYRDLSKLNRDPRKIIYLSGHALDSSLQPENSVPIKPWKCEADDTALLDFIPFLEFVARNSPADIRQVLESYKGCDIPTEFIRRSKEHQRRIQEQKQQGRIWKR 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5331187 5335806 - CmoCh09G010020.1 Cmo09g01002 389004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01002 360 SUPERFAMILY HAD-like 162 325 IPR036412 -
Cmo09g01002 360 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50-LIKE 9 315 - -
Cmo09g01002 360 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 9 315 - -
Cmo09g01002 360 CDD HAD_FCP1-like 175 291 - -
Cmo09g01002 360 MobiDBLite consensus disorder prediction 42 64 - -
Cmo09g01002 360 Pfam NLI interacting factor-like phosphatase 176 322 IPR004274 -
Cmo09g01002 360 ProSiteProfiles FCP1 homology domain profile. 170 313 IPR004274 -
Cmo09g01002 360 Gene3D - 160 343 IPR023214 -
Cmo09g01002 360 SMART forpap2 173 301 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01002 K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50 - csv:101207617 660.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01127 Cmo09g01002 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01002 Cmo-Chr9:5331187 Cmo12g00061 Cmo-Chr12:321718 9.25E-15 dispersed
Cmo01g01127 Cmo-Chr1:9297060 Cmo09g01002 Cmo-Chr9:5331187 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g648 . . . . . . . . . . Cma01g01081 Cma09g01002 Car01g00956 Car09g00913 Sed07g2743 Cpe06g00810 Cpe02g00817 Bhi09g01749 Tan01g3181 Cmetu01g1982 . . Mch11g1259 . . . . . . . . . . Cone14ag1212 Cone15ag1233 Lsi02g01842 Csa07g00939 . . . . . . Bpe11g00582 . . Bma14g00172 . Cmo01g01127 Cmo09g01002 . . . . . . . . . . . . . Cla09g02063 Cam09g2152 Cec09g2217 . . . . . . Chy01g01165 Cme01g00930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005181 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 4 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01002 Cmo_Chr09 FPKM 9.814511 10.435903 9.14608 9.101598 11.109187 10.971782 13.421676 11.589855 11.625954 10.755696