Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01003 ATGGCGGGAAAGCTTGGAAGCTCGGAGAGAATCAGAATCGACATCATGAGGAAAATCAGGGAGCTAACAAGATCTATGATCGTTGAACTGAGTAATGGAAGCTCCAAGATGATCGCTATCGATCGGTTTAAAAATTACTGCACTAATTCCACTGAAAACTGGTTCGGATTTTGTTTTGCTTGTTTGCAGTTCAATTTATCTGAAGGGAAGGAGATTCTAACACTTCAAAGGCAAAGCCATGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTACTCATTATTCAGCAGCTTCTGCGAGAAAATAGACATAGCTCAAAGAGAGATATATATTACATGCATCCCTCCGTATTTACAGATCAATCTGCTGTTGACCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGCCGGCACAATCTAAATGTGGTTGGTGCTGCGCTTCATTTTACTTTGTTTCCAATTTATGTTTCCTCCATGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGGTTCGCAGAAGCTGGTAGGAGATTTGATTGCATAAAGAAGCCTAACAATATATTGCTGGTCCTGCGAATTACATACTCGTGGTTGAGAAAGAATCAGGTGAAGGCTATACTGATAAAAGCTGATTTCACGTTAAAAGTACCTGGTTCGATTTTTGAACGTGCAGTTTTTCAGCGTCTAGCAAATGACCATTTCTGCAGCAGAAACCGTTGCATTGTAATCTCGGTGAGCATGTCTCAGGGACGTGGATATCCAGATGTTCCTACTAGAAGGTTTCTGCGGCTTCTCGTTGATGTCTTGGCATTGCCTGCATTTTGTTTGGTAGATTGTGATCCATATGGTTTCGACATTCTGACAACATATCGATTCGGTTCTATGGTTAGGCTCCTCAATTGA 912 41.78 MAGKLGSSERIRIDIMRKIRELTRSMIVELSNGSSKMIAIDRFKNYCTNSTENWFGFCFACLQFNLSEGKEILTLQRQSHVRRLDVLLRVLLIIQQLLRENRHSSKRDIYYMHPSVFTDQSAVDRAINDICILLQCSRHNLNVVGAALHFTLFPIYVSSMVSVGNGLVMGWLRFAEAGRRFDCIKKPNNILLVLRITYSWLRKNQVKAILIKADFTLKVPGSIFERAVFQRLANDHFCSRNRCIVISVSMSQGRGYPDVPTRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMVRLLN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5337349 5340265 + CmoCh09G010030.1 Cmo09g01003 389005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01003 303 Gene3D - 6 145 IPR036388 -
Cmo09g01003 303 SUPERFAMILY DNA topoisomerase IV, alpha subunit 81 298 IPR036078 GO:0003677|GO:0005694
Cmo09g01003 303 Pfam Type IIB DNA topoisomerase 82 143 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Cmo09g01003 303 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 11 299 - -
Cmo09g01003 303 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 11 299 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cmo09g01003 303 Gene3D - 165 302 - -
Cmo09g01003 303 CDD TOPRIM_TopoIIB_SPO 227 298 IPR034136 -
Cmo09g01003 303 PRINTS DNA topoisomerase VI subunit A family signature 155 170 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cmo09g01003 303 PRINTS DNA topoisomerase VI subunit A family signature 106 117 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cmo09g01003 303 PRINTS DNA topoisomerase VI subunit A family signature 281 297 IPR002815 GO:0003677|GO:0003918|GO:0005694
Cmo09g01003 303 PRINTS DNA topoisomerase VI subunit A family signature 249 270 IPR002815 GO:0003677|GO:0003918|GO:0005694
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01003 K10878 SPO11; meiotic recombination protein SPO11 - csv:116406416 369.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00481 Cmo-Chr3:5197091 Cmo09g01003 Cmo-Chr9:5337349 1.98E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01003 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.193436 0.0 0.0 0.0 0.0 0.388251