Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01006 ATGGGTAGCCAAGAAGTGAGACAGCCAATGTTACCAACATCATCTAATACCTTCGTAACAAGGTCAATAGATATTCCGAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATTCGGGTTCTCCTCATACAGAGACCACCAGCACCGCTACTGGGCTAGTTCCACGTTCAGGATTAGTTTTTGGAAATCTACACCCGAGTTTTATAAGAGTAGCCTTAGTTTTAATAATGTACTTGGGTATAGGAACTTTATGTTTTTACCTTGTCGGGCACCAAATCAAAGGGGGAAAAACCAACGGAGTAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACCGTTGGATATGGTGATCTTGTCCCAAACACTCCTTCCACAAAGCTACTAGCTTGTGCTTTTGTGTTCACAGGAATGGCCGTAGTTGGCCTAATATTAACCAATGCAGCTGATTATTTGGTAGAGAAGCAGGAGATCTTTCTATTTAAGGCCTTCCATATGCACCAAAATGGTCCTTTTGACATTACAAAAGAAATTGATACCAATAAAGCTAGAAATAAGTGTATAGTGGTGTTTCTTTTTCTTCTTTTGTTCATAATTTTTGGGACCGTGTTTCTAGTTACTCTAGAGGAGTTGGATTTTATTGATGCCTTTTATTGTGTATGTTCTACCATTACTACGCTAGGCTATGGAGATAAAAGCTTCTCGACCCGGTGGGGGCGTCTATTCGCCATTTTCTGGATCTTGATAAGTTCCATCACTCTGGCTCAGTTTTTCCTTTATATTGCTGTGCTAAACACTGAGAGAAGGAAAAAATCTCTGGTGAAGTGGGTTCTAAGTAAAAAGGTGACGGTCTTGGACCTCGAGGCTGCGGATCTCGATGATGATGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTGAAGGAGATGGGGAAAATCACTGAAGATGACATTTCACCTGTTCTGGACGAATTTGAGAATCTTGATGTTGATCAGTCAGGAACATTGTCCATATCTGATATAACACTTGCTCAATCATCTTAA 1056 41.1 MGSQEVRQPMLPTSSNTFVTRSIDIPRSKRRLRRTKSAPHSGSPHTETTSTATGLVPRSGLVFGNLHPSFIRVALVLIMYLGIGTLCFYLVGHQIKGGKTNGVVDAIYFTIVTMTTVGYGDLVPNTPSTKLLACAFVFTGMAVVGLILTNAADYLVEKQEIFLFKAFHMHQNGPFDITKEIDTNKARNKCIVVFLFLLLFIIFGTVFLVTLEELDFIDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISSITLAQFFLYIAVLNTERRKKSLVKWVLSKKVTVLDLEAADLDDDGVVGAAEFVIYKLKEMGKITEDDISPVLDEFENLDVDQSGTLSISDITLAQSS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5354417 5356098 + CmoCh09G010060.1 Cmo09g01006 389008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01006 351 MobiDBLite consensus disorder prediction 29 52 - -
Cmo09g01006 351 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 23 343 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo09g01006 351 Gene3D - 67 161 - -
Cmo09g01006 351 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 23 343 - -
Cmo09g01006 351 Pfam Ion channel 76 156 IPR013099 -
Cmo09g01006 351 Pfam Ion channel 196 265 IPR013099 -
Cmo09g01006 351 Gene3D - 175 286 - -
Cmo09g01006 351 SUPERFAMILY Voltage-gated potassium channels 183 289 - -
Cmo09g01006 351 PRINTS Two pore domain K+ channel signature 228 237 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo09g01006 351 PRINTS Two pore domain K+ channel signature 112 140 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo09g01006 351 ProSitePatterns EF-hand calcium-binding domain. 294 306 IPR018247 -
Cmo09g01006 351 SUPERFAMILY EF-hand 287 346 IPR011992 -
Cmo09g01006 351 SUPERFAMILY Voltage-gated potassium channels 67 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01006 Cmo-Chr9:5354417 Cmo18g00576 Cmo-Chr18:5464120 3.56E-120 dispersed
Cmo01g01125 Cmo-Chr1:9286483 Cmo09g01006 Cmo-Chr9:5354417 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01006 K05389 - csv:101216032 558.91