Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01017 ATGTCTCTGGGTTACGCAGAGAAGCTTTCGTTCATAGAAGACGTTGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCACGTTTTAGAAGAAAAGATTGAGCGACTAACTATGATGATACAAAAGAGCAAGCATCTAGTGGTGTTTACAGGTGCAGGAATATCGACCTCTTGTGGCATACCTGATTTTCGAGGTCCTAAAGGAATATGGACTCTTCAGGCGAGTTATATCTCCTACGCTATGTCTAATAAGATACGTTTGAGGCTCGAGCAACCTTTTTTTATCTGGATTTATTAA 300 40.67 MSLGYAEKLSFIEDVGKVGMTEHFDPPHVLEEKIERLTMMIQKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQASYISYAMSNKIRLRLEQPFFIWIY 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5411127 5413585 - CmoCh09G010170.1 Cmo09g01017 389019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01017 99 Pfam Sir2 family 52 77 IPR003000 GO:0070403
Cmo09g01017 99 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 75 IPR029035 -
Cmo09g01017 99 ProSiteProfiles Sirtuin catalytic domain profile. 35 99 IPR026590 -
Cmo09g01017 99 Gene3D - 26 96 - -
Cmo09g01017 99 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SRT1 1 75 - -
Cmo09g01017 99 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-(6/7) FAMILY MEMBER 1 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01017 K11416 SIRT6, SIR2L6; NAD+-dependent protein deacetylase sirtuin 6 [EC:2.3.1.286] - csv:101212255 153.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00651 Cmo-Chr2:4060814 Cmo09g01017 Cmo-Chr9:5411127 5.90E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g671 . . . . . . . . . . . Cma09g01014 . . Sed04g3651 Cpe06g00822 . Bhi09g01778 Tan01g3196 Cmetu01g1518 . . Mch11g1279 . . . . . . . . . . Cone14ag1221 Cone15ag1242 Lsi02g01823 . . . . . . . . . . . . . Cmo09g01017 . . . . . . . . . . . . . Cla09g02081 Cam09g2169 Cec09g2234 . . . . . . Chy01g01142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006785 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 2 1 1 1 2 2 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01017 Cmo_Chr09 FPKM 2.365467 2.313548 0.278599 0.235049 5.844504 6.591987 6.513218 0.319386 0.144038 0.287206