Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01022 ATGTCTTTCAACAGAGAAAGAGATGACCCTCTTTCCTTCGCCGCCGCAAACCCATCTTCCTCTTCTTCTCCCGTCTCCGTTTCCGACCCTCGTGATACCTTTCTCTCCGACCCAAATTCCCACATCGGAAGTGCCTCCGGCAGCTTCCAAAATGAGGGTCTTCTCTCTGATTTCACTGCCAATATCAGTGATGCCGAGTTTGGATTCTCTCGCCCTGAGTTCCGCCAGAGCCCACTTGCTGGAACTGTGGATTTCTATGACCGCCATGTGTTTCTTTGTTACAAGAATCCTCAGGTTTGGCCTCCTAGGATTGAGGCTGCTGAGTTCGATCGCCTCCCTAGGTTGCTCTCTGCGGCTGTAATGTCGAGGAAGGGCGATATGAAGAAAGAAACCCGTTTAACAATATGTGAGGGGCACGACGGAACCGAGACATCGAATGGGGATGTTTTGATCTTCCCAGACATGATAAGATATAGGAGGTTGACCCATTTTGATGTTGACACATTTGTTGAAGAAGTTCTTGTGAAGAATGGTGAGTGGCAGCCTGGATCTCCTGAAGCATTGAAGGGTTCATATGTTTTTGTATGCTGTCATGGGTCCCGAGATCGTCGGTGTGGCGTTTGTGGTCCTACATTGGTCAGTCGGTTCCGAGATGAGATAAAATTTCTTGGTCTTCAAAATGAAGTATCTGTTAGACCATGCTCGCATATTGGAGGCCACAAGTATGCAGGAAATGTCATTATATTTAGATCAAATGCCAATGGAGATGTCAGTGGGCACTGGTATGGATATGTTTCCCCTGAAGACGTGTTTTTATTGCTTCAGCAGCATATTGTGAGAGGGAACATTGTAGACGAACTTTGGAGGGGCCAGATGGGTTTATCAGAGGAAGAACAGAAGCTGAGCCTAGAACGAAGACTTAGCATAATCAATGGTTCAAATGGCCCTAAAAGCAATGAAGAGCCGACACAAATCGAGACCAGTGATCCGAACTCCGATCACTATAGCTCTCGTGTCGATGTTGTAGCCTGCTGTCAGGGACGCGGAGATGGTTACTCCTCGTGCTGTCAGAATCCCAAACTCTCAGGAACAGTAATCGATTCAGATACAAACGACGACGTTCCTCCAAACGTCGCAACTGCAAAGAGCAGCAACAGAAAACTAACCTCACGAACCAATAGCAGCAAATCATCATCATCCCGTAAGGTTTGTGCAATGCCAACATGGCTCGAGAGCTGGGAACGCGAAGATACATACGCCGTTGCTGCTGTTATCTGTGCTGCTGTGTCGGTTGCTATTGCTTATCGCTGCTACAAGCAGCTATAA 1326 47.51 MSFNRERDDPLSFAAANPSSSSSPVSVSDPRDTFLSDPNSHIGSASGSFQNEGLLSDFTANISDAEFGFSRPEFRQSPLAGTVDFYDRHVFLCYKNPQVWPPRIEAAEFDRLPRLLSAAVMSRKGDMKKETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNGEWQPGSPEALKGSYVFVCCHGSRDRRCGVCGPTLVSRFRDEIKFLGLQNEVSVRPCSHIGGHKYAGNVIIFRSNANGDVSGHWYGYVSPEDVFLLLQQHIVRGNIVDELWRGQMGLSEEEQKLSLERRLSIINGSNGPKSNEEPTQIETSDPNSDHYSSRVDVVACCQGRGDGYSSCCQNPKLSGTVIDSDTNDDVPPNVATAKSSNRKLTSRTNSSKSSSSRKVCAMPTWLESWEREDTYAVAAVICAAVSVAIAYRCYKQL 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5451935 5456603 - CmoCh09G010220.1 Cmo09g01022 389024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01022 441 CDD TRX_Fd_Sucrase 190 292 IPR009737 -
Cmo09g01022 441 MobiDBLite consensus disorder prediction 365 399 - -
Cmo09g01022 441 Pfam Sucrase/ferredoxin-like 79 290 IPR009737 -
Cmo09g01022 441 SUPERFAMILY Thioredoxin-like 192 294 IPR036249 -
Cmo09g01022 441 Gene3D Glutaredoxin 190 291 - -
Cmo09g01022 441 MobiDBLite consensus disorder prediction 310 334 - -
Cmo09g01022 441 PANTHER SUCRASE-LIKE PROTEIN 64 440 - -
Cmo09g01022 441 MobiDBLite consensus disorder prediction 1 48 - -
Cmo09g01022 441 MobiDBLite consensus disorder prediction 14 48 - -
Cmo09g01022 441 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 64 440 IPR009737 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01022 - - - csv:101211536 721.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01110 Cmo09g01022 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02813 Cmo-Chr4:20178974 Cmo09g01022 Cmo-Chr9:5451935 1.57E-31 dispersed
Cmo09g01022 Cmo-Chr9:5451935 Cmo15g00369 Cmo-Chr15:1718277 1.49E-111 dispersed
Cmo01g01110 Cmo-Chr1:9214896 Cmo09g01022 Cmo-Chr9:5451935 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g688 . . . . Bpe09g00118 . . Bma13g01123 . . Cma01g01068 Cma09g01019 Car01g00944 Car09g00923 Sed04g3640 Cpe06g00827 Cpe02g00830 Bhi09g01790 Tan01g3206 Cmetu01g1047 . . Mch11g1291 . . . . . . . . Cone6ag0004 Cone9ag0007 . . . . . . . Blo10g00873 . Bda12g00973 . . . . . Cmo01g01110 Cmo09g01022 . . . . . . . . . . . . . Cla09g02087 Cam09g2174 Cec09g2240 . . . . . . Chy01g01131 Cme01g00886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006682 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 3 1 0 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01022 Cmo_Chr09 FPKM 12.603872 14.702077 20.040924 19.041985 17.211147 15.216043 18.235432 21.159634 21.082012 24.18004