Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01023 ATGGCTGCCGCCAAGTTCAACAAGAAGAAGGTTGTGAAACGGGACGACCTTCCATTGAAAGGGAAGAAGAAGGACGAGCTCTTCACACGTAAACGTTCTCAGGAGGAAGATGATGATTCTGAGATTTCGGATGGTATGGATATGGAAGAAGTAGAGAATGGAGTGCTTGATGGTGATGAGGAAGGATCGGAATCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCTTTGGCCGATGATTTCCTACAAGGAAGTGACGACGAAGAGAATGGTTCAGGCTCGGATTCAGGTTCTGATTCTGATGAAGACATCGAAAACAAGTCGAGAATCATCGATGAAGAGAGGGCGAGGGAAGAAAAAGATGCGGCGGATGAAATGCAGCTCAATATTAGAGAAGAATCCGATGAGTTCAGATTACCTACCAAGGAGGAACTTGAAGAAGAGGCGCTTGGACCTCCCGACCTTTCAAATTTACAAAGGCGTATAAGAGAGATTGTTCGAGTTCTTACGAATTTCAAGGCTTTGAGGCAGGAGGGAGCAACCCGTAAGGATTATGTTGAACAACTTAAGAAAGATCTTTGTTCATATTATGGGTATAACGAATTTCTTATTGGGGTGCTAGTTGAGATGTTTCCAGTTGTTGAGCTAATGGAACTTATTGAAGCCTTTGAAAAGCCTAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTCGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATCGGAGCGACTCCGGAATATATGGCTGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCCGTGATGGCCCTTGCTCCTCAGGAAAAAGAACGAATTATTGACATGGCGGCAGCACCTGGTGGTAAAACTACATACATAGCGGCACTTATGAAAAATAGTGGACTAATATTTGCAAATGAGATGAAAGCACCAAGACTGAAGTCACTCACTGCAAATTTACAGCGGATGGGAGTGACAAATACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCGAAAGTATTAGGCAAGAACACGGCCGATAGAGTTCTGTTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGACGAATCTGTTAAAACCTCAAAAAGCTTAGAAGAAATCCAGAAATGTGCTCAGTTGCAAAAGCAACTTATACTCGCTGCAATCGACATGGTCGATTCAAATTCAAAATCTGGGGGATATGTTGTGTACTCCACATGCTCCATCATGGTTGATGAGAATGAAGCAGTTGTTGACTATGCACTTAAAAAGAGGGATGTGAAACTTGCGCCATGTGGCCTTGATTTTGGACGTCCCGGGTTTATTCGGTTCAGGGAAAAACGTTTTCACCCATCTTTAGAGAAGACGAGACGTTTCTACCCCCACGTCCACAACATGGATGGATTTTTCGTGGCAAAGTTGCAGAAAATGAGCAACAAGATTCCAACTGCTCAATCTTCAGAATTATTGGAAGAGACCGCGGAAGAAGATAGCGAGTCAGAGAAGAGCGGAAATGAAAAGGATGACGGCGAATGTCTCCACCCGAAAGTTAGCGACGGGAAAAAGAGGAAGAAGGTTTCGAAAAACCACGACGATGAAAATGGCGAAGAAGAATCCAAGCCGACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATCTCAAAAGCTAGGGAGGAAAAACGACAAGCCTTGAGGGAGAAGAAAACTGGGAGCAAGAAAGATGATGAAAAACGACAAGCTTCGAGGGATACGAAAACTGGGAGCAAGGAGGAGTAA 1881 44.02 MAAAKFNKKKVVKRDDLPLKGKKKDELFTRKRSQEEDDDSEISDGMDMEEVENGVLDGDEEGSESGSEVSSDGDDPLADDFLQGSDDEENGSGSDSGSDSDEDIENKSRIIDEERAREEKDAADEMQLNIREESDEFRLPTKEELEEEALGPPDLSNLQRRIREIVRVLTNFKALRQEGATRKDYVEQLKKDLCSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGLIFANEMKAPRLKSLTANLQRMGVTNTVVCNYDGKELPKVLGKNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAQLQKQLILAAIDMVDSNSKSGGYVVYSTCSIMVDENEAVVDYALKKRDVKLAPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLQKMSNKIPTAQSSELLEETAEEDSESEKSGNEKDDGECLHPKVSDGKKRKKVSKNHDDENGEEESKPTVEKRKKRKFPSREEISKAREEKRQALREKKTGSKKDDEKRQASRDTKTGSKEE 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5457883 5463352 - CmoCh09G010230.1 Cmo09g01023 389025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 182 202 IPR023273 GO:0008168
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 215 227 IPR023273 GO:0008168
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 238 251 IPR023273 GO:0008168
Cmo09g01023 626 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 219 508 IPR001678 GO:0008168
Cmo09g01023 626 MobiDBLite consensus disorder prediction 514 626 - -
Cmo09g01023 626 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 231 507 IPR011023 GO:0003723|GO:0006396|GO:0008757
Cmo09g01023 626 Gene3D Vaccinia Virus protein VP39 295 621 IPR029063 -
Cmo09g01023 626 Gene3D Sun protein; domain 3 185 292 - -
Cmo09g01023 626 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 191 507 IPR029063 -
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase signature 279 293 IPR023267 GO:0001510
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase signature 308 318 IPR023267 GO:0001510
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase signature 430 446 IPR023267 GO:0001510
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase signature 490 507 IPR023267 GO:0001510
Cmo09g01023 626 PRINTS RNA (C5-cytosine) methyltransferase signature 376 388 IPR023267 GO:0001510
Cmo09g01023 626 MobiDBLite consensus disorder prediction 39 99 - -
Cmo09g01023 626 MobiDBLite consensus disorder prediction 100 124 - -
Cmo09g01023 626 MobiDBLite consensus disorder prediction 22 38 - -
Cmo09g01023 626 MobiDBLite consensus disorder prediction 22 124 - -
Cmo09g01023 626 Coils Coil 116 136 - -
Cmo09g01023 626 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 215 292 IPR031341 -
Cmo09g01023 626 Pfam 16S rRNA methyltransferase RsmB/F 296 506 IPR001678 GO:0008168
Cmo09g01023 626 MobiDBLite consensus disorder prediction 130 149 - -
Cmo09g01023 626 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 33 593 IPR023267 GO:0001510
Cmo09g01023 626 PANTHER BNACNNG49010D PROTEIN 33 593 - -
Cmo09g01023 626 MobiDBLite consensus disorder prediction 531 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01023 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 961.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01109 Cmo09g01023 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01371 Cmo-Chr1:10796901 Cmo09g01023 Cmo-Chr9:5457883 8.64E-09 dispersed
Cmo03g00864 Cmo-Chr3:6738449 Cmo09g01023 Cmo-Chr9:5457883 6.58E-16 dispersed
Cmo07g00559 Cmo-Chr7:2507717 Cmo09g01023 Cmo-Chr9:5457883 5.28E-16 dispersed
Cmo09g00354 Cmo-Chr9:1530462 Cmo09g01023 Cmo-Chr9:5457883 3.38E-18 dispersed
Cmo01g01109 Cmo-Chr1:9208937 Cmo09g01023 Cmo-Chr9:5457883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g697 . . . . . . . . . . Cma01g01067 Cma09g01020 Car01g00941 Car09g00924 . Cpe06g00828 Cpe02g00831 . . . . . . . . . . . . . . . . . . Lsi02g01817 . . . . . . . . . . Bma14g00675 . Cmo01g01109 Cmo09g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme01g00884
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01023 Cmo_Chr09 FPKM 3.065553 3.03696 6.391486 7.45691 2.882784 2.484887 3.498154 9.453432 9.395363 9.437548