Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01027 ATGATTCATTCTGGTTTCTTCCTTTCGGGTCCATCGCTTAATTCTGATGCTACTACGTCTTTCATATCGATTCCGGTGTCTGGAGGCGATGGCGCTACGGTGTTGGATGCCATCCCCCCTTCTTTCTGGGTTAGAACAGCCATGAAAGTATCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTATCAAAACGGATCGAGATCTGATCTCGGGCCAAATCCTTTCGATTCGTGTTCGTGGATGGTGATGGAACTTGTAGCCCTGTTATTTCAGCTAATCATCTCAGTGATTACTCTTGCCATTTCACAGACTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGGTTCTCTATGGCCGCCATCGGTATCATTATCGAATCCAGGGAGATGGGAACAGTCTTTCGGATATCGAACACGAACAGCAGAGGAGTAATGAATCATCAAGGTACTTGCAGTTGATGAACAAATGTCGCACGTCTCTTGATCTTTTCTTCGCGATATGGTTCGTAATGGGCAATCTTTGGGTCCTCGATTCTCGCTTCGCCTCGTTCGAAAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGTCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTTTGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTGGACGATCAAATCTCCCAGCTACCTTACTGGAGATACCGAGCAGTCCACACCGACATCAACCCCGAAAGTCGACCCGATAACAGCAATACAGGACTTCCAAAAGACGACCCAGAATGTTGCATTTGCCTTGCAAAGTACATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTGCATCTTCATGCCCTCTCTGTAAGCAACAACTTCAGAGATAA 1023 45.16 MIHSGFFLSGPSLNSDATTSFISIPVSGGDGATVLDAIPPSFWVRTAMKVSRARWFIFLRRVFHYQNGSRSDLGPNPFDSCSWMVMELVALLFQLIISVITLAISQTERPVWPMRLWIGGYDLGCVLSLLVLYGRHRYHYRIQGDGNSLSDIEHEQQRSNESSRYLQLMNKCRTSLDLFFAIWFVMGNLWVLDSRFASFERAPKLHLLCSFLLVWNVICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPYWRYRAVHTDINPESRPDNSNTGLPKDDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAIASSCPLCKQQLQR 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5491616 5494364 + CmoCh09G010270.1 Cmo09g01027 389029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01027 340 SMART ring_2 294 334 IPR001841 -
Cmo09g01027 340 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 339 - -
Cmo09g01027 340 SUPERFAMILY RING/U-box 293 338 - -
Cmo09g01027 340 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 36 339 - -
Cmo09g01027 340 Pfam Ring finger domain 293 335 IPR001841 -
Cmo09g01027 340 CDD RING-H2_RNF111_like 292 335 - -
Cmo09g01027 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 339 IPR013083 -
Cmo09g01027 340 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00674 Cmo-Chr5:3421231 Cmo09g01027 Cmo-Chr9:5491616 2.69E-55 dispersed
Cmo09g01027 Cmo-Chr9:5491616 Cmo12g00254 Cmo-Chr12:1650074 2.36E-52 dispersed
Cmo09g01027 Cmo-Chr9:5491616 Cmo09g01028 Cmo-Chr9:5496998 1.81E-171 tandem
Cmo01g01104 Cmo-Chr1:9185983 Cmo09g01027 Cmo-Chr9:5491616 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01027 - - csv:101217150 603.594