Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01028 ATGTCCCCTTTTCCCTCTTTCTTTCCTCTTTTCCCCAATGCCTTTGACCCTTATCCAATTTACCCATTAAAACCCAACTGGGTCTTCCTCGTCGGTGGCTCGGGCGGGTGGATTTCGAATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCATTTCGGGGCCTCCGTGTAACTACAATGGCACTGCTTCCTTTATCTCGAATTTGTCGGTGGAAGAAGATGGTGCAGGTGCAGATGTTAGAGATGACAATTCTGTTTCTCTCCCTGCATCTTTCTGGGTTAGGGTAGCAATGAGGGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGAGTATTTCACTACCAGAATGGATCGAGGTCAAATCTCGGGTCCGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAACTGATAGCTATGGTGTTTCAGCTGGCCATCACTGTGTTTTTTCTCGCCATTTCAGAGACAGAGAAGCCTGTTTGGCCTATGAGACTGTGGATAGTTGGTTACGATCTTGGCTGCGTTCTTAGCTTGTTGCTTCTCTACGGACGATATTGGCACGTTTATTTAATGCCGCGCGTTGGCCTTCCCGACATCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGCTTGATGAACAAATGTCGGTCGTCTCTTGAACTTTTCTTTGCCATATGGTTCGTAATGGGCAATGTTTGGATCGTCGATTCTCGCTTCGATTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGCGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCTTTTCCATTCATACTTTTTCTTCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTCTCGGGTATAACATTAACATGGCATCGACCGACAAAGGCGCATCGGATGATCAAATATCCGAGCTACCTTGCTGGAGATATAAAGCAAGCTCAAAACAACCTGATAGTAACAACAAAGGACTTCCAAAGGAGGATCCAGAATGTTGCATTTGCTTAGTGAAATACAGAGATGAAGAAGAAGTAAGAGAGTTGCCTTGTTCGCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTATCGATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTTCAAAGATAA 1149 45.08 MSPFPSFFPLFPNAFDPYPIYPLKPNWVFLVGGSGGWISNKERSFSMINSGYFISGPPCNYNGTASFISNLSVEEDGAGADVRDDNSVSLPASFWVRVAMRVSRARWFIFLRRVFHYQNGSRSNLGSDPFNSSSWMAMELIAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCVLSLLLLYGRYWHVYLMPRVGLPDIEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFDSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISSLLGYNINMASTDKGASDDQISELPCWRYKASSKQPDSNNKGLPKEDPECCICLVKYRDEEEVRELPCSHLFHLKCVDKWLSITSSCPLCKQQLQR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5496998 5500165 + CmoCh09G010280.1 Cmo09g01028 389030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01028 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 381 IPR013083 -
Cmo09g01028 382 SMART ring_2 336 376 IPR001841 -
Cmo09g01028 382 Pfam Ring finger domain 335 377 IPR001841 -
Cmo09g01028 382 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 77 381 - -
Cmo09g01028 382 CDD RING-H2_RNF111_like 334 377 - -
Cmo09g01028 382 ProSiteProfiles Zinc finger RING-type profile. 336 377 IPR001841 -
Cmo09g01028 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 77 381 - -
Cmo09g01028 382 SMART ringv_2 335 377 IPR011016 GO:0008270
Cmo09g01028 382 SUPERFAMILY RING/U-box 328 380 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01104 Cmo09g01028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01104 Cmo-Chr1:9185983 Cmo09g01028 Cmo-Chr9:5496998 1.12E-176 dispersed
Cmo09g01028 Cmo-Chr9:5496998 Cmo12g00254 Cmo-Chr12:1650074 5.99E-55 dispersed
Cmo09g01027 Cmo-Chr9:5491616 Cmo09g01028 Cmo-Chr9:5496998 1.81E-171 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01028 - - bhj:120085372 609.372