Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01031 ATGGGAAAGAGAAGAGAGCGTCGCCGTGCAGCTCTCAGCAATGCCGGTCGCCGTGTCAAGCTTGATCTATTCGCCGAGCCCTCCGGAGATTTAGATGGCTCTGATGCACATGAAGAAGTTGGAGGGGATATAGATTCAAGACAGACAACCAAGTTACCTAAATCAGCATCCTCCTCAGGTGGGTTCTATCAGTGTTCTTCAAAAGGACTATGTAAAGGGGATATGAGTGCTTCACATTATAATGGTGGATATTTCAAACTTTATATCAGGTCAGGTCAGGGCCACTGCCACAATGAACATGTGAATGACTCTCAATCATTATGCTGTTTTTGGAGATTTCGACAGGGAAAATTTTTCATCGGTCAACAAGCACAAAATCCCTTGCTGTTACTGGAGCAATATAGTGATGATGAAGTTGATGAGGAAGTGGACGAGGACTCGAATAAAAATTCAGATCATGATGGACAAGATGCATTGTTACCTGACTGCAATGACGAGGTTGCTGCCCTTCCTGCTGAGGGATGTGAGAAAGTGGAGGCAAATGTCGGTGAAGACATCATTGCTGAAAAGGCTGTTCAAGAGGAACCTGAGCAAGGTTCTGCTGAATTTTCTGAGAACCTGGAGAGCAAAGATGAAGCAAAAACTGACACTAATAACTTTGGATATTTAAGCAAGGAAACTGATCTGGTTCAAACATCTGTACCAGCCACATCTACTGTACAAGTATCAGGGGATGTTATTTCAGGATGGAGGGTTGTCATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTTCCTGATGTTGTTTCGGCTCAGACTCAGCCTACTCTATCAGCCACCGACGTTATAACTTCTCCGACTCAATTTCCAGAGAACGTTACAGTATTTAAACAGGATTCTGGCTTATCTAATGGTGGGAGGTTAGATGCTTTTTCAGCAGAAAGCACAGGTTACAAGAACGGCATTCCAGTTACTGCAAGTCAGGGTTCCGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAATAATGTGAATATAGCAAAAGCTGCTTCTGAGATCTATGCTGATTACGCGGTGACTAATGAAGAACAGAAATCAGGGTTGGATCTTCCTTCACATCTTCTAAACTGGAGTTCGAGCTTGTTAGAGAGATTAAAATCATTACAGAAGTCTGGGGGTCATGAATGGACATTAAAGTACATATTGGAAACTCAGGTTAGACTTTCGGATTTGGAGTCGCTGATGCCGTATAAGGCATCGTTGCTTCCATTCTGGGAACACTTGGCAAGGAAACTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGTAGTATCGTCGCAATTGGATGAAGCCAAGACTACTGATAGTCCAAACATTGTAAGAGACGAGAAATTTCAGGGAAGGTCGGATGTTGCGTCTGATGTTGCGAGAAAGGAAAATAGTGGTGTTTCTGCTTTGGAGCATTCACATTTGCCTACTGATTCTGCTTCTTTGACTATCATTGCAAATGGAGAAAATATTTCACCGTCTAAGGGGAACTCTACTAGTGTGATTGAGCATGCAAGTGAAATTGCAATTGATGAAATGGCTTCCAAGAGTGAACATTCTGTGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCGGTTTTGCAGGTAGCTTGACAGTGGCTGGTACACCAGATATGTACAATGCTAAGTCGTTTACTTTGTTCGAGCAACCACTTCAGCCAGATCAACAAGCCCAGCCAAATCTTTCTTCAGGCTTTGCATACATGGGGCACGAGGATGGCAGTGTAGCACCACCGCCACCACCAGCGGACGAAGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAACCAGCTGAACCATTATATCCTATGCCTCCATCTTATACCCAACTTGGGCAGCCTGTTTGTTACACTGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTCAGTATTATGCACATCCTGTCCCTGAAGTTGTACCTAGTGCAGATTTTTACGGACATCCAGAAACGTGTAACGTTGTATTGGCTCAAGCACCATTTTGCTATGAGGCAGTTCCCAATTCGCATACGGGTTCTGCTCCCCTAGTTGTAAATGGTGTTGTGCCTGAAGGTTATGGTATTCTTCAAAACGCAACGTCCTCTCTTCCCGTTTTTAGTACTGCTGGGTCGTCTCAGTTGCATGTTGATTCTGCATCTGTGAGTTTTGATCCTTCTTTCACTTTTCATTATGGATCTTCTGATACTACAAGTATGAATACTGCTTCTGCCGCTGATGAAATTGACAAGGGGTGTGGAGACACGAAAGCCTCTGTCCGAGTATCTACTTCAGTCTCCCCAACTAACGATGTTCCGCCAACAAGTAATGCCGTTACTGATCCTTCGGCTGTTGCTAATACAACTGCAATTTCCAAGGTTCAACCAAAAGCTCTGCGCAGTAAAAAGCGGACAGTTGCAGTTGCTCCATCCTTGAGATCGAATAAGAAAGTTTCGAGTTTGTTGGACAAGTGGAAAGCAGCGAAGGAAGAACTGGAAGAAGACGAGGAAGAACCAGAAAACGCTTACGAGATTCTCGAGAGGAAACGAGAAAGAGAAATAAAGGAATGGCATGCACAGCAAATTGCCAGTGGAGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGCGGTGATTGGCGTGAGCGGGTAAAGCGAAGGAGAGCGCAATCATCGAGTGATGTTACTCAATCCCCTGCTGAAGCATCCACAGATGGAAACCAGCAGCAGCCCGACCTGGCAGAAATCGCAAAAGATCTACCCTCAGGATGGCAGGCATATTGGGACGAGTCAACGAAGCAGGTGTATTATGGTAACGTTAACACCTCGGAAACGTCGTGGACAAAACCGAGGAAGTGA 2994 44.42 MGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDIDSRQTTKLPKSASSSGGFYQCSSKGLCKGDMSASHYNGGYFKLYIRSGQGHCHNEHVNDSQSLCCFWRFRQGKFFIGQQAQNPLLLLEQYSDDEVDEEVDEDSNKNSDHDGQDALLPDCNDEVAALPAEGCEKVEANVGEDIIAEKAVQEEPEQGSAEFSENLESKDEAKTDTNNFGYLSKETDLVQTSVPATSTVQVSGDVISGWRVVMHEESHNYYYWNVETGETSWEVPDVVSAQTQPTLSATDVITSPTQFPENVTVFKQDSGLSNGGRLDAFSAESTGYKNGIPVTASQGSEVDQSYAAFSTCSNNVNIAKAASEIYADYAVTNEEQKSGLDLPSHLLNWSSSLLERLKSLQKSGGHEWTLKYILETQVRLSDLESLMPYKASLLPFWEHLARKLKQIEDDINKEIYQTAVVSSQLDEAKTTDSPNIVRDEKFQGRSDVASDVARKENSGVSALEHSHLPTDSASLTIIANGENISPSKGNSTSVIEHASEIAIDEMASKSEHSVEDVDMEVDMEVEDAGFAGSLTVAGTPDMYNAKSFTLFEQPLQPDQQAQPNLSSGFAYMGHEDGSVAPPPPPADEEWIPPPPPDNEDVPPPPPDEPAEPLYPMPPSYTQLGQPVCYTEPYQVSYPDSSIQYYAHPVPEVVPSADFYGHPETCNVVLAQAPFCYEAVPNSHTGSAPLVVNGVVPEGYGILQNATSSLPVFSTAGSSQLHVDSASVSFDPSFTFHYGSSDTTSMNTASAADEIDKGCGDTKASVRVSTSVSPTNDVPPTSNAVTDPSAVANTTAISKVQPKALRSKKRTVAVAPSLRSNKKVSSLLDKWKAAKEELEEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSDVTQSPAEASTDGNQQQPDLAEIAKDLPSGWQAYWDESTKQVYYGNVNTSETSWTKPRK 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5503860 5512438 - CmoCh09G010310.1 Cmo09g01031 389033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01031 997 Coils Coil 860 894 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 26 58 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 137 161 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 936 956 - -
Cmo09g01031 997 SUPERFAMILY WW domain 962 996 IPR036020 GO:0005515
Cmo09g01031 997 ProSitePatterns WW/rsp5/WWP domain signature. 250 276 IPR001202 GO:0005515
Cmo09g01031 997 ProSiteProfiles WW/rsp5/WWP domain profile. 963 997 IPR001202 GO:0005515
Cmo09g01031 997 PANTHER OS06G0298400 PROTEIN 1 996 - -
Cmo09g01031 997 ProSitePatterns WW/rsp5/WWP domain signature. 969 995 IPR001202 GO:0005515
Cmo09g01031 997 MobiDBLite consensus disorder prediction 618 652 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 31 45 - -
Cmo09g01031 997 CDD WW 966 996 IPR001202 GO:0005515
Cmo09g01031 997 SMART ww_5 964 997 IPR001202 GO:0005515
Cmo09g01031 997 SMART ww_5 245 278 IPR001202 GO:0005515
Cmo09g01031 997 ProSiteProfiles WW/rsp5/WWP domain profile. 244 278 IPR001202 GO:0005515
Cmo09g01031 997 Gene3D - 245 296 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 597 652 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 146 160 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 193 217 - -
Cmo09g01031 997 CDD WW 248 277 IPR001202 GO:0005515
Cmo09g01031 997 Gene3D - 961 997 - -
Cmo09g01031 997 MobiDBLite consensus disorder prediction 905 963 - -
Cmo09g01031 997 Pfam WW domain 965 995 IPR001202 GO:0005515
Cmo09g01031 997 Pfam WW domain 248 276 IPR001202 GO:0005515
Cmo09g01031 997 SUPERFAMILY WW domain 239 278 IPR036020 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01031 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1207.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01101 Cmo09g01031 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01101 Cmo-Chr1:9167289 Cmo09g01031 Cmo-Chr9:5503860 2.62E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01031 Cmo_Chr09 FPKM 3.01529 3.170244 2.854041 2.826664 2.830526 3.288921 3.357899 2.872769 2.693838 3.283323