Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01033 ATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAATTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAATGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTTCCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTCATTGGATGTATGTTTGGCACCTTGTACGTTTCCATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGGTAGAGCTCTTCTCACATGGAAGAGTAATCTAACGAGCTCTACAGATGCTTTGAGTACATGGAATCCAGAGGACCCGACACCGTGTTCATGGTTTGGAGTTGTCTGCGACTCCCATGGATATGTAGAGGAGATAACCCTGGCATCACTGGATTTGCGAGGTACATTGCCATCGAATTTCCAGGCTCTTAAGTTCTTGAGGACCCTGGTGATATCTGAGACGAATATAACCGGAAGAATCCCGAAAGAGTTTGGAGATTATAACGAGCTCAGAGTTCTTGATCTTAGCCAAAATAACCTTTTGGGAGAAATCCCAGAAGAGATTTGCAGGCTGGGGAAGCTGGAGGATTTGTCCCTTCAAAGCAATGGGTTTGAAGGGACGATACCGTTAACGATTGGGAATCTTTCGAACCTCGTGTATCTTAGACTCGCAGACAATGAAATCAGTGGGGAGATTCCAAAGAGCATTGGAATGTTGCAGAAGCTTAATCTTTTCAGAGCTGGAGGGAATAAACTTCTGGAAGGTAAATTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGTCATGTTAGGCCTAGCCGAAACTGGAATCTTCGGAGCTCTTCCTTCATCGATTGGGATGCTGAAAAATATACAGAACATAGTCATATATAAAGCACAACTTTTCAACACAATCCCGGAAGAGATCGGAAACTGCAGTGAGTTGCAAACTCTTATATTGTATCAGAATAGCATTTCTGGGCGGATACCTAGAGGAATTGGGAAGCTGAAAAAGCTTCAAACACTTTTTCTATGGTTGAACTTGTTGGAAGAATCTATACCAGAAGAGATTGGAGACTGCGAGGAACTCGTAATCCTAGACGTTTCCGAAAATCTTCTAAATGGAACCATACCGAAAAGTATAGGACGGCTACCTAAACTTCAAGAGTTTCAACTAAGTCTTAATCAGATTACGGGTTCAATACCTCCGGAAATGTTTAATTGTTCGACTTTGGTTCATGTGGAAGTAGACAACAACAAACTTTCGGGCGAGATACCGGTTTCGGTAGGCAACCTTAAGAACTTGCATTTATTTTTTGCTTGGGAGAACAAATTAACAGGCAGTATTCCCAGCACTCTCTCAGACTGCCCTGATCTCCAGGCCATTGATTTCTCGTACAATCACTTGACGGGTTCAATACCGAAAGAGATCTTCGGTTTGAAAAATCTCACGAAACTTCTTCTCATACGAAATAATCTATCGGGAATCATTCCACCTGAAATAGGACATAGTAGGACACTATCGAGGTTTCGACTGGCTAAGAATAGGTTTGGAGGTACTATTCCATCAGAGATGGGACATTTGAAGAGCTTAGATTTTCTGGACTTAGCTGAAAACCATTTTGTTGGAGAAATTCCTCAATCGTTATCGAACTGTGACGTTCTTCAGTTTATTGACCTCAGTTCAAATGAGTTCACCGGTACTCTTCCAATCGAACTGCCGATGAGCCTACAGTTTTTAAATATATCCAACAACAGGCTTGAAGGTCAGGTCAACCCGGGCATCGGAGCTTTGACGGAACTAACAAAACTTGACCTGAGAAACAACCAACTTTCAGGGCAAATCCCAGCAGAAATTGTTTCCTGTCAAAAGCTTCAATTTTTAGACCTCAGCAACAATTTCTTCTCTGGGGAACTCCCTAAGCAATTAGGTATAATTTCTTCACTTGACATTGCTCTTAATCTAAGTTGGAATCGTTTCTCAGGTGAAATCCCGTCCGAATTCTCTGGTCTCGTCAGGCTAAGTATTCTAGACCTCTCCCATAACAACCTCTCTGGGGACCTAAGCCTTCTTGTAGAGCTTGAAAACCTTGTGACTCTAAACATCTCCTACAACCACTTCTCCGGCGAATTGCCCGACACGCCATTCTTTCAAAAGCTCAGTAAAAGCGCCATTGCTGGAAACAAAGACCTCTATGTTTCAGGCGAGCAAGTAATTCCTGAAGGCAAGTTTGAATCCAGAAACGTAAGCAAAGAAGCAATAAAGATAGTCCTGCCAATCTTGATCAGCATAAGTGCAGTGCTTTTCTTTTTAGCGATCTACTTGCTAATTCGCACACAAATGGCTAATTTCATGCTACTGATAGATGGCGATAAATGGGAAATAACCCTGTTTCAAAAACTTGATATCTCAATCGACTACATCATTAAAAACTTAACTGAATCGAACGTGATCGGTGCTGGAAGCTCTGGTGCCGTGTACAGAATCACAACCCCAAAAGGGAAAACAGTGGCAGTGAAGAAAATGTGGTCAACCGACGAATCTGGAGGCTTCAACTCTGAAATCCGTACTTTGGGATTAATTCGACACAAGAACATAATAAGGCTACTGGGTTGGGGATCCCACAGGAATTTGAAGCTCCTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCTTTTATCCATGACAATGGAAAAGGAGGAGCAGAATGGGAGGCCAGATACGACATCCTCTTAGGAGTGGCTCATGCTCTAGCATATCTTCACCATGATTGTACTCCACCAATCGTACATGGCGATGTGAAAACACTGAATGTCCTGCTCGGCCATGACTTTGAGCCATACCTAGCCGACTTTGGTCTCGCCAGTAATGTGAGTACAAACAACAGCAATGATGCTTCAAAGAAGCCAATACTCAGACAACTTGCTGGCTCTTTCGGGTACATGGCTCCAGAACATGGGTCGATATTGACAGTCTCAGAGAAGAGCGATGTGTACAGCTTCGGTATAGTGGTAATGGAGGTTCTAACAGGGCGGCACCCTCTGGACCCGACATTACCTGGAGAAGGCAATTTGGCGCAATGGGTTAGAGACCATTTAGCCACAAAGAAAAACCCAGCCGACATTTTAGACTCGAAGCTTAGAGAAAGAACCGAACCCACAATGCGCGAAATTCTTCAAACCCTAGACGTCGCGTTGATCTGTGTCAGCGTCAAGTCCGACGATCGACCCCCCATGAAAAGTATAGTCGCCATGCTCGAGGAGATTCGAAGTGTCGAAGTGGGGAAAGCTGCTGCCGATGACCCCAAGGCGGAAAAGCCGGTGGTGATTCAATCGACCCTGCAGAGGAAGTTTTCGTCTCAAGGATCTTTGTATTGCAAATCTCCTTTGTAG 3825 43.92 MLKTAQGWFTQGDSSGSDNQVKPTSSLLANWNSYAESQAADDSSSNSRIGFDLENAVRSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATGVFFIFIAFALFLPIMVLVPHKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSGRALLTWKSNLTSSTDALSTWNPEDPTPCSWFGVVCDSHGYVEEITLASLDLRGTLPSNFQALKFLRTLVISETNITGRIPKEFGDYNELRVLDLSQNNLLGEIPEEICRLGKLEDLSLQSNGFEGTIPLTIGNLSNLVYLRLADNEISGEIPKSIGMLQKLNLFRAGGNKLLEGKLPMEIGNCSSLVMLGLAETGIFGALPSSIGMLKNIQNIVIYKAQLFNTIPEEIGNCSELQTLILYQNSISGRIPRGIGKLKKLQTLFLWLNLLEESIPEEIGDCEELVILDVSENLLNGTIPKSIGRLPKLQEFQLSLNQITGSIPPEMFNCSTLVHVEVDNNKLSGEIPVSVGNLKNLHLFFAWENKLTGSIPSTLSDCPDLQAIDFSYNHLTGSIPKEIFGLKNLTKLLLIRNNLSGIIPPEIGHSRTLSRFRLAKNRFGGTIPSEMGHLKSLDFLDLAENHFVGEIPQSLSNCDVLQFIDLSSNEFTGTLPIELPMSLQFLNISNNRLEGQVNPGIGALTELTKLDLRNNQLSGQIPAEIVSCQKLQFLDLSNNFFSGELPKQLGIISSLDIALNLSWNRFSGEIPSEFSGLVRLSILDLSHNNLSGDLSLLVELENLVTLNISYNHFSGELPDTPFFQKLSKSAIAGNKDLYVSGEQVIPEGKFESRNVSKEAIKIVLPILISISAVLFFLAIYLLIRTQMANFMLLIDGDKWEITLFQKLDISIDYIIKNLTESNVIGAGSSGAVYRITTPKGKTVAVKKMWSTDESGGFNSEIRTLGLIRHKNIIRLLGWGSHRNLKLLFYDYLPNGSLSSFIHDNGKGGAEWEARYDILLGVAHALAYLHHDCTPPIVHGDVKTLNVLLGHDFEPYLADFGLASNVSTNNSNDASKKPILRQLAGSFGYMAPEHGSILTVSEKSDVYSFGIVVMEVLTGRHPLDPTLPGEGNLAQWVRDHLATKKNPADILDSKLRERTEPTMREILQTLDVALICVSVKSDDRPPMKSIVAMLEEIRSVEVGKAAADDPKAEKPVVIQSTLQRKFSSQGSLYCKSPL 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5521116 5530428 + CmoCh09G010330.1 Cmo09g01033 389035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01033 1274 ProSitePatterns Protein kinases ATP-binding region signature. 961 984 IPR017441 GO:0005524
Cmo09g01033 1274 SUPERFAMILY L domain-like 450 792 - -
Cmo09g01033 1274 Pfam Leucine rich repeat N-terminal domain 224 260 IPR013210 -
Cmo09g01033 1274 SUPERFAMILY Protein kinase-like (PK-like) 947 1231 IPR011009 -
Cmo09g01033 1274 ProSiteProfiles Leucine-rich repeat profile. 816 838 IPR001611 GO:0005515
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 333 417 IPR032675 -
Cmo09g01033 1274 Pfam Got1/Sft2-like family 95 207 IPR007305 GO:0016192
Cmo09g01033 1274 MobiDBLite consensus disorder prediction 1 22 - -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 716 794 IPR032675 -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 795 880 IPR032675 -
Cmo09g01033 1274 Pfam Protein kinase domain 957 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01033 1274 SUPERFAMILY L domain-like 221 492 - -
Cmo09g01033 1274 Gene3D Phosphorylase Kinase; domain 1 939 1028 - -
Cmo09g01033 1274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1073 1085 IPR008271 GO:0004672|GO:0006468
Cmo09g01033 1274 SMART LRR_typ_2 358 382 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 623 647 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 741 765 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 527 551 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 312 334 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 671 695 IPR003591 -
Cmo09g01033 1274 SMART LRR_typ_2 479 503 IPR003591 -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 223 332 IPR032675 -
Cmo09g01033 1274 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 218 1244 - -
Cmo09g01033 1274 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 218 1244 - -
Cmo09g01033 1274 ProSiteProfiles Protein kinase domain profile. 955 1233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01033 1274 Gene3D Transferase(Phosphotransferase) domain 1 1029 1252 - -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 520 616 IPR032675 -
Cmo09g01033 1274 SUPERFAMILY L domain-like 763 855 - -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 617 715 IPR032675 -
Cmo09g01033 1274 Gene3D Ribonuclease Inhibitor 418 519 IPR032675 -
Cmo09g01033 1274 Pfam Leucine Rich Repeat 313 334 IPR001611 GO:0005515
Cmo09g01033 1274 SMART serkin_6 955 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01033 Cmo-Chr9:5521116 Cmo11g00084 Cmo-Chr11:394869 0 dispersed
Cmo18g01341 Cmo-Chr18:12699819 Cmo09g01033 Cmo-Chr9:5521116 2.20E-12 dispersed
Cmo01g01100 Cmo-Chr1:9155880 Cmo09g01033 Cmo-Chr9:5521116 4.27E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74583 PF00069 Pkinase 9.40E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01033 - - mcha:111010465 1399.03