Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01073 ATGGACGAACTAAAACTCGAAAACTTACCGTTCTTCGGAATCGTCGGAATTCTCCAAGAAACTTGGAAATTGATACACCAATGGAGGAAAATCTTCACCCAAATTACTCTTGCCTTCATTCTTCCTCTCTCTCTCTTGTTCTTCACCAACATGGAAATATCCAATTTTTTCCTTCACAAAATCTCCCATGATAAAATGATTTTACAACACACTCAAAAATTCACACCCCAATTCCTTAAACTCTCCGACCTCGTATCCTCCGAAAGAATCTATGTGGTTCTTTTCACTTTAGCGTCTTTAATCTTCTCGACGATCTTCTCTCTCCTCTCCACCTCCGCCGTCGTCTATACCGTTGCTTGTATCTACACAGCACGTGACGTTTCTTTCGATACCGTGATCCGGGTCCTCCCGAAAGTTTGGAGGAAGCTTCTTGTTACATTCTTGTGTGTTTTTGCAGCCTTTTTGGCCTTCAATTTTGTTGCTTTTGGTGTGATGTTTTTGATACCTGTGATAGCAATCATAATCTATGGCCCAAATGACCATCACTTCTTAGCCGGCATTGGAACCATTTTTTTCTTCTTTACCATCTTTTATTTAGCTGCCATTTGGTACTTGACCATAATTTGGCAACTCTCGAGCGTCGTGTCGGTTTTGGAGGCGTCGTGTGGGTTCAAAGCCATGGCAAAAAGCAAGGGTTTGCTTAAGGGGAAGATGAAGATGGTGGTGAAGTTAACAATGTTGCTGAATTTGCCATTGGGAGTGGCTCAGTTAGTGTTTTACTACTTGGTTGTTCGGTCAGCGTCGGTCGGGGTGGCGGTCAGGGGTATTTTGGGGATTTGTTGGGTGGTGTTGTTTATGGTGTTGTTCTTGGTCAATCTTGTGGTGGAAACTATGGTGTATTTTGTGTGCAAATCGTTTCATTGTGAGAGTGTTGATAAGGTGGCGCTGTCGGAGCATCTTCAAGGCTATCTGTTGGATCACTATGTCCAGTTGAAGGTGGTTGATGACTATGTGCAGCTTGCGAAATTGCAAGCTGTTTGA 1041 43.13 MDELKLENLPFFGIVGILQETWKLIHQWRKIFTQITLAFILPLSLLFFTNMEISNFFLHKISHDKMILQHTQKFTPQFLKLSDLVSSERIYVVLFTLASLIFSTIFSLLSTSAVVYTVACIYTARDVSFDTVIRVLPKVWRKLLVTFLCVFAAFLAFNFVAFGVMFLIPVIAIIIYGPNDHHFLAGIGTIFFFFTIFYLAAIWYLTIIWQLSSVVSVLEASCGFKAMAKSKGLLKGKMKMVVKLTMLLNLPLGVAQLVFYYLVVRSASVGVAVRGILGICWVVLFMVLFLVNLVVETMVYFVCKSFHCESVDKVALSEHLQGYLLDHYVQLKVVDDYVQLAKLQAV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5816960 5818000 + CmoCh09G010730.1 Cmo09g01073 389075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01073 346 PANTHER PROTEIN, PUTATIVE-RELATED 5 342 - -
Cmo09g01073 346 PANTHER OS08G0107100 PROTEIN-RELATED 5 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01073 - - - cmos:111442875 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01063 Cmo-Chr1:8552381 Cmo09g01073 Cmo-Chr9:5816960 1.72E-34 dispersed
Cmo09g01068 Cmo-Chr9:5801078 Cmo09g01073 Cmo-Chr9:5816960 7.94E-89 dispersed
Cmo09g01070 Cmo-Chr9:5807261 Cmo09g01073 Cmo-Chr9:5816960 2.21E-43 dispersed
Cmo09g01071 Cmo-Chr9:5810686 Cmo09g01073 Cmo-Chr9:5816960 1.25E-55 dispersed
Cmo09g01073 Cmo-Chr9:5816960 Cmo13g00884 Cmo-Chr13:7986585 4.73E-42 dispersed
Cmo09g01072 Cmo-Chr9:5814479 Cmo09g01073 Cmo-Chr9:5816960 6.55E-85 tandem
Cmo09g01073 Cmo-Chr9:5816960 Cmo09g01074 Cmo-Chr9:5819490 9.41E-99 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1185 Blo01g01318 . Bda01g00686 . . . . Bma01g02103 . . . Cma09g01064 . . . Cpe06g00867 . Bhi04g02156 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01073 . . . Car09g00967 . Cpe02g00865 . . . . . . . . . . . . . . Lsi08g00272 . Chy03g00836 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002545 0 2 0 0 0 2 2 2 2 2 2 2 3 2 3 3 3 0 1 2 2 2 0 5 4 0 6 2 3 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01073 Cmo_Chr09 FPKM 18.106777 20.298666 63.980927 66.645668 10.117968 9.954025 10.971451 353.773956 346.231689 339.366272