Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo09g01077 | ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTGCGCTTCGAGATCGCTTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGCGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCATTAGAGGTCATTCATGAGCTTCAGAAACAGTTCCCAATTAAACGTTCACCTATGAGAATACGATATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATTCCTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCTTTAATGAGCGAACTGCAAGGCAAGTTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGGAATCAGAATCAGCTATTCCTCAGCTAAGCGAAGCTTTACAAAAACAGGCAATCTCTGTCGATGGCGGGAATACCGTAAAGGAGGGTAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCACAAGCATAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATGGGCGACTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA | 1083 | 44.04 | MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5836014 | 5840210 | - | CmoCh09G010770.1 | Cmo09g01077 | 389079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo09g01077 | 360 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
Cmo09g01077 | 360 | PANTHER | BNAANNG06530D PROTEIN | 1 | 360 | - | - | |
Cmo09g01077 | 360 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Cmo09g01077 | 360 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 231 | IPR002140 | GO:0042256 | |
Cmo09g01077 | 360 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
Cmo09g01077 | 360 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Cmo09g01077 | 360 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
Cmo09g01077 | 360 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Cmo09g01077 | 360 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 360 | IPR039100 | - | |
Cmo09g01077 | 360 | Gene3D | - | 100 | 172 | IPR037188 | - | |
Cmo09g01077 | 360 | SMART | ZnF_U1_5 | 296 | 330 | IPR003604 | GO:0003676|GO:0008270 | |
Cmo09g01077 | 360 | Gene3D | - | 174 | 251 | - | - | |
Cmo09g01077 | 360 | SUPERFAMILY | beta-beta-alpha zinc fingers | 292 | 330 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g01077 | Cmo-Chr9:5836014 | Cmo09g00513 | Cmo-Chr9:2386258 | 6.84E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo09g01077 | K14574 | - | csv:101215380 | 655.595 |