Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01085 ATGCTTGGTGACTCCACTACTTCCGTCTTGGGCGGTGGCGCCGCCGTGCCGGAGACGAATCATTGCCATGATGAGGTAATCGGCGACATGGGTGTAGCGGCGGCGGCGGTGGAGGAGATTAATAATAATTCTGGTGAAGAGGAGAGACGGAGAAGCGGAGGAGGAGGAGGAGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACCTTAGCTCTCCTGAAAATTCGCTCCGATTTGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAACTAGGGGAGCTTGGATATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATACCATAAAAGAACAAGAGAAGTTCGTAGTGGGAAACCAGATAGCAAAACTTATAAATTTTTTGAACAATTAGAAGCTCTTGAGAATCACCCACCTTTTAATTTCAATCCACCGCCGCCACCTCCGCCGTCAACCACCGTCATTCCCACTGTTCCATCCACCACCACCACCACCCTACCCCACTTGATGAACATATCCTTCTCTCAACCAAATCCCACAATTCACCTCCCGTCTCCGCCCGCTCCGTTCAATAACCCTACCACCTCGTCCATTCCCGTGGGGTTTCTTGAAGCGGATCTTATCTCGAATTCAACATCGGATGATGTCGATGATTCATCGACATCATCCGATGAGGCACCGAGGAGGAGGACGAAGAAGAGGAAATGGAAGGAGTTTTTTGAGAGATTAATGAAGGAAGTGATTCAAAAACAAGTGGAAATGCAAAAGAGATTCTTGGAAGCTATTGAGAAAAGGGAACAAGAGAGAATTGTTAGAGAAGAAGCTTGGAGAATTCAAGAAATGGCTAAAATCAATAGAGAAAGAGAGATTTTAGCTCATGAAAGATCAATGGCGGCTGCTAAAGACGCCGCCATTACTTCGTTCCTCCAAAAAATAACCGAATCCCAACAGAACAACAACAACCACAACAACAACAATCTGTCACGAACGCCACTGCCACCGCCGCCACCACAACAACAACCAATACCCATGTCAAATCCGACACCGGTCGTACAACCGCCACCGCCACCAGCACCGCCATCTTCATCGACATTGCAAGTAGTTCTTCCACAAAAGATGGAGATTATGAAAATGGATCATAATGGTGGGGAGAATTACACTATGAGTCCATCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTAGAAGCATTGATCAAATTAAGAACAAATCTTGAAGCTAAATATCAAGAGAATGTACCAAAAGGGCCATTATGGGAAGAGATATCATCAGCCATGAAGAGAATAGGTTACAATAGAAATGCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAACAAGAAAAACAAGGCCAGAGGATTCCAAGACATGCCCTTATTTCCACCAGCTCGATGCATTGTATAGGGAAAAGAGCGGCGGAAACAACAACAACAACAATAACAGGAAGCTCGAGCTCGAAAACATCGATTCTTCGACGATGATTCCATTGATGGTTCAACCTGAACAACAATGGCCACCGCAGCAAGAGATCACCCGACCCGACTCGGGCAACGAAGAGATGGAGAGCGAACCGATGGATCGCGACGATAAAGACGATGATGACGACGATGATGAAGAGGAAGAGGACGAGGGTGGTGGGAACTATGAGATTGTGGCTAGCAAACCAACTTCGGTGAGTACTGGTGAGTGA 1797 46.24 MLGDSTTSVLGGGAAVPETNHCHDEVIGDMGVAAAAVEEINNNSGEEERRRSGGGGGGDDGDRSFGGNRWPRQETLALLKIRSDLDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTREVRSGKPDSKTYKFFEQLEALENHPPFNFNPPPPPPPSTTVIPTVPSTTTTTLPHLMNISFSQPNPTIHLPSPPAPFNNPTTSSIPVGFLEADLISNSTSDDVDDSSTSSDEAPRRRTKKRKWKEFFERLMKEVIQKQVEMQKRFLEAIEKREQERIVREEAWRIQEMAKINREREILAHERSMAAAKDAAITSFLQKITESQQNNNNHNNNNLSRTPLPPPPPQQQPIPMSNPTPVVQPPPPPAPPSSSTLQVVLPQKMEIMKMDHNGGENYTMSPSSSSSRWPKVEVEALIKLRTNLEAKYQENVPKGPLWEEISSAMKRIGYNRNAKRCKEKWENINKYFKKVKETRKTRPEDSKTCPYFHQLDALYREKSGGNNNNNNNRKLELENIDSSTMIPLMVQPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDDDDEEEEDEGGGNYEIVASKPTSVSTGE 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5914416 5916803 + CmoCh09G010850.1 Cmo09g01085 389087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01085 598 MobiDBLite consensus disorder prediction 42 57 - -
Cmo09g01085 598 CDD GT1 68 133 - -
Cmo09g01085 598 CDD GT1 416 480 - -
Cmo09g01085 598 SMART sant 413 475 IPR001005 -
Cmo09g01085 598 SMART sant 66 128 IPR001005 -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 535 549 - -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 37 69 - -
Cmo09g01085 598 ProSiteProfiles Myb-like domain profile. 409 473 IPR001005 -
Cmo09g01085 598 PANTHER - 2 591 - -
Cmo09g01085 598 Pfam Myb/SANT-like DNA-binding domain 68 154 IPR044822 -
Cmo09g01085 598 Pfam Myb/SANT-like DNA-binding domain 415 502 IPR044822 -
Cmo09g01085 598 Gene3D - 417 478 - -
Cmo09g01085 598 Gene3D - 70 131 - -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 230 253 - -
Cmo09g01085 598 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 591 - -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 336 384 - -
Cmo09g01085 598 ProSiteProfiles Myb-like domain profile. 68 126 IPR001005 -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 349 383 - -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 557 582 - -
Cmo09g01085 598 MobiDBLite consensus disorder prediction 535 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01052 Cmo-Chr1:8334382 Cmo09g01085 Cmo-Chr9:5914416 0 dispersed
Cmo02g00617 Cmo-Chr2:3835565 Cmo09g01085 Cmo-Chr9:5914416 2.76E-119 dispersed
Cmo09g01085 Cmo-Chr9:5914416 Cmo20g01084 Cmo-Chr20:10264768 1.34E-21 dispersed
Cmo09g01085 Cmo-Chr9:5914416 Cmo09g01086 Cmo-Chr9:5930480 4.19E-79 tandem
Cmo13g00415 Cmo-Chr13:5187491 Cmo09g01085 Cmo-Chr9:5914416 8.63E-17 transposed
Cmo01g01051 Cmo-Chr1:8293827 Cmo09g01085 Cmo-Chr9:5914416 2.89E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10391 PF13837 Myb_DNA-bind_4 7.50E-21 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01085 - - cmos:111443426 969.148