Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01088 ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACGGCGCCCCTGCGGCAGCCCAGGGTGGTGGGAAGTCGAAGAAGAAGACATTTGCAGTAGATGACGATGAGTACTCTATTGGAACCGAGTTGACTGAAGAAGCCCAAGATCAGGAGGTCAAGGTCGTGATAACGGGGAAGAAGAAGGGTAAGAAGGGCAATTCGAAAGCTTCACAACTTAAAGAAGATGATGATGATGATGATGTGGATGGTGTTTCTGAAATTGTTATCACCGGAAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAAGAGGAGGGAAAGGACGGTGCTAATGATGATGACGATGATGATGAATCTGTGTTGACAGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGTGATCAAGTTTTCAGGTAAGAAGAAGTCGTCGAAGTCTTCCAAGAAGAGTGGGTTTTCTGCAGTGTCAGCATTCGGTGCCCTCGATGATGAGAAAGATGAAGATGTAATTGATGATGAGAATGAAGAGATTGATGATGAGCCTGTTATTTCATTTACAGGTAAGAAGAAGAAGTCATCACAAGGTGGTAAGAAGGCCGGGAACGCATTTACAGGTTTTAGTGGTCTTGATTATGAAGATGAGGACAGAAATGATGATATGGATGATGGTGAAGATGTTACGACAATTACCTTCTCTGGTAAGAAAAAGAAGTCCTCTAAGGGTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCGTTAGCAGATGAGGAAAATGATGGTGATGATTCTATTTCAAAGCCAGATAAATTAGACATTGATGGTGTTGATGAAGATGATGTCAATGTTATTTCATTTTCTGGCAAGAAGAAATCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCGCTTGGCGATGAAATACTTAATACAGCAAGTAGCAATCTTGATTCTGATTTATCTAAAGCTAAGACGGAAGCGGTGGCTGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGCGGAAGAACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCAGCTACATCAAAACCAGCAGACCCTCCTCTTTCTTCACAAGAGGCTAAAGTTGAGAACCAACCTGAGGTTGTAGCTCCTCCTGAAAAGGAAGTGGAAGAAGAAAGCACAGAATCTGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAAGAGAAGGAAAAAAAGGCTGCAGCTGCGGCAGCAGCGGCTGCTGAAGGGAATGATGAGAAAATCGAGGAGGTGAAGACTGAAATTATTGAACCCAAAAAAGGTGCTGCGAAGGGTAAAGTGGTAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGAAGAAAGGAAGAAGAAGAGCGAAGGAAAAGGGAAGAAGAAGAGAAATTGAGAAAGGAAGAAGAAGAGAGACGTAGACAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCGAAGCGTAGGAAAAAGGAGAGAGAAAAAGAGAAGCTCCTACGGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGCTGGAGGCAATGAGGAATCAAATATTATCAAATGCAGGGGGCTTACCTCTGTCTACATCTGACCCCAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCACCATCAAACAAATGGTAGTGCACAGACTAAGGTAGTGGAACATGTAGAAGAAAGAATACAAGAAAAAGATTTGGCAGAGACTGAAATATTGGAATCTGAGAAGATTGAAGCTGTTGAGTCGACACTTGAGGAGGAAAAATCAGATGCTATTGAGGCTACTGTAGATAATGAAATTCAAGAAGACGAGGATGATGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTTGAGTCTGAATCTGAGAATGGCATGAAAAAAGATAGAAAGAATAGTGCTCCAACTTCAGGCGGTGCAGTTGCCAAGCCAGCTGCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAACACAAAGAAGCAACATGAGGTTGAAGTTGTCGAAAAGGGCAAAGGAAAAGATGATGCTGTTAAGAAAAAAACTTCAATTCCGGATGCTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAGGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCTACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAATCGTTTACAAACTTGCGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCTCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCTATACTTAAAACAATGAAGCAGCAATCCAAAGATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAAGGATTAAATACCGAGCTTTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCCGACATGTTACTACTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTCCATGAAGGAGATCAAATAGTTGGCCCAATTGTTACTACTATTCGAGCCCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTGAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGAATAAAAATAACTGGACAGGGTCTTGAGCATGCCATTGCTGGAACCAGTCTTCACGTGGTAGGTCCTGAGGATGACTTGGAAGACATTAAGGATTCAGCAATGGAAGATATGAAGTCAGTTTTGAGCAGGATAGACAGGTCTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCGGCAGTGAGCATTCCTGTTAGTGGAATTAGTATAGGACCCGTTCATAAAAAAGATGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCTCGAGAACTTGCAGATGAGCTTGGTGTGAAGATTTTTATTGCTGATATCATCTATCACTTGTTCGACCAATTCAAGGCCTATATCGATAATCTTAAAGAGGAAAAGAAGAAAGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTTAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATTGTGTTGGGGGTGGATGTGGTTGAAGGCATTGCCAAGGTTGGCACACCAGTTTGTATTCCTCAAAGAGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCAAAGAAAGGGCAGAAGATTGCCATTAAGATAGTCGGGCACTCTTCGGAGGAGCAGCAAAAGATGTACGGCAGGCATTTCGACTTGGAGGACGAACTCGTCAGCCATATATCAAGGAAGTCCATTGACCTTCTCAAAGCCAATTATCGGGATGACTTGTCCACGGACGAGTGGAGACTGGTGCTGGTTCGGGTCGGGTGTGGTTGGATTTATAATTTGAAGATGCAGAGGAAAGGTGGGGAGGAGGCAAGAACAGGTTGTTCCTTGAAAAGAACAGCTGTGCCTGCCGAGTTTGGGTTTTATGGAATGGATGATGATTGTTGA 4176 42.17 MGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELTEEAQDQEVKVVITGKKKGKKGNSKASQLKEDDDDDDVDGVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGKDGANDDDDDDESVLTAEKDDDEEEDSVIKFSGKKKSSKSSKKSGFSAVSAFGALDDEKDEDVIDDENEEIDDEPVISFTGKKKKSSQGGKKAGNAFTGFSGLDYEDEDRNDDMDDGEDVTTITFSGKKKKSSKGSKKSGNLFSAALADEENDGDDSISKPDKLDIDGVDEDDVNVISFSGKKKSSKKKSSSTFTALSDENALGDEILNTASSNLDSDLSKAKTEAVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPATSKPADPPLSSQEAKVENQPEVVAPPEKEVEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKGKVVEKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSAQTKVVEHVEERIQEKDLAETEILESEKIEAVESTLEEEKSDAIEATVDNEIQEDEDDDEWDAKSWDDAVVDLSLKSSFADEELESESENGMKKDRKNSAPTSGGAVAKPAAPAQKSLPSQPIKSQDIENTKKQHEVEVVEKGKGKDDAVKKKTSIPDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLEDIKDSAMEDMKSVLSRIDRSGEGVCVQASTLGSLEALLEFLKSPAVSIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVVEGIAKVGTPVCIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSTDEWRLVLVRVGCGWIYNLKMQRKGGEEARTGCSLKRTAVPAEFGFYGMDDDC 1391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5960986 5972502 + CmoCh09G010880.1 Cmo09g01088 389090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01088 1391 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1088 1217 IPR036925 -
Cmo09g01088 1391 Coils Coil 409 445 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 444 557 - -
Cmo09g01088 1391 Coils Coil 1200 1220 - -
Cmo09g01088 1391 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1345 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 401 422 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 175 191 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 728 759 - -
Cmo09g01088 1391 Gene3D - 762 990 IPR027417 -
Cmo09g01088 1391 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1345 IPR015760 -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 357 372 - -
Cmo09g01088 1391 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 768 984 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 Gene3D Translation factors 1218 1348 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 632 647 - -
Cmo09g01088 1391 Pfam Elongation factor Tu domain 2 1007 1079 IPR004161 GO:0005525
Cmo09g01088 1391 PRINTS GTP-binding elongation factor signature 888 897 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 PRINTS GTP-binding elongation factor signature 772 785 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 PRINTS GTP-binding elongation factor signature 836 846 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 PRINTS GTP-binding elongation factor signature 852 863 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 1 606 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 678 696 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 632 764 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 270 284 - -
Cmo09g01088 1391 Coils Coil 473 540 - -
Cmo09g01088 1391 CDD IF2_aeIF5B_IV 1226 1321 - -
Cmo09g01088 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1054 IPR027417 -
Cmo09g01088 1391 SUPERFAMILY Translation proteins 1222 1346 IPR009000 -
Cmo09g01088 1391 CDD aeIF5B_II 992 1097 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 307 338 - -
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 648 665 - -
Cmo09g01088 1391 CDD IF2_eIF5B 771 981 - -
Cmo09g01088 1391 Gene3D - 1105 1211 IPR036925 -
Cmo09g01088 1391 TIGRFAM small_GTP: small GTP-binding protein domain 773 898 IPR005225 GO:0005525
Cmo09g01088 1391 MobiDBLite consensus disorder prediction 118 142 - -
Cmo09g01088 1391 Pfam Elongation factor Tu GTP binding domain 772 980 IPR000795 GO:0003924|GO:0005525
Cmo09g01088 1391 Pfam Translation-initiation factor 2 1092 1204 IPR023115 -
Cmo09g01088 1391 Gene3D Translation factors 991 1104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00754 Cmo-Chr4:3752191 Cmo09g01088 Cmo-Chr9:5960986 1.11E-26 transposed
Cmo01g01046 Cmo-Chr1:8244410 Cmo09g01088 Cmo-Chr9:5960986 9.28E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01088 K03243 - csv:101204360 1870.51