Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01090 ATGGACCCTAATTTCTCGTCGGCGAAGCCACCGTTGGCGGCGGCGGCGATGGACATCGAACAGATGCCGGAGAATCCTTACCGTGGTTCTCACCACCGCCGCTCTCACTCCGACACTTCCTTTCGCTTCCCGAACCTCGACGAACTTCTCTTCTTTGACCCTTCAGAGCTCGACCTCTCGATGCTGTCTTCCCCTTCTTCTCCTCCTTCTTGTGGTGCTGCGATGGTTGTCGATTCGTCTGATTCCAAGTTTTCCGATGATGCCGTTCGCCCTAAGCCGGAGCCGATTGTCTCCGGATCGTTCGGTGGTCACTTGCGGAGCTTATCCGTGGACTCTGACTTCTTGCAGAATCTGGACCTCGGAGGAGATAGTGGGGAGATCGATTCTTTGGCGACAAAAACTCCAGTGAGTGAACATTGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTGGAGGCGAATTCAAGCCTAGCGATTGATGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGGGCTAAAAGGATTCTTGCAAACAGACAATCTGCTGCTCGATCGAAAGAGAGGAAGATGCGGTACGCGAATGAGCTGGAGAGAAAGGTTCAGACACTGCAGTCTGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTTCAGAGAGATACTTCTGGATTAACTGTCGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAGCTTCGAGATGCTTTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAAGCCAGGTTGCATCAGTCAATGGAAATCCCTTCAACCGACCTCCGCAATATCCATCGCCCCGTTCACCTCTACACCATTTTAGTAGCTCGCACGCCCAGCAACCGGGTCAACAGCAGCAGCCACCGTCCATCCTGGCCATAAACCAGCAGCAATCAGATCCGAAATGGACAAACTCATCTCAGCTTCACAGTCATAGTCCGGATGGCCAAGCAAAACCTTAG 1059 52.03 MDPNFSSAKPPLAAAAMDIEQMPENPYRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPSCGAAMVVDSSDSKFSDDAVRPKPEPIVSGSFGGHLRSLSVDSDFLQNLDLGGDSGEIDSLATKTPVSEHWPVRHRHSLSMDGSSSSLEANSSLAIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKMRYANELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAASQVASVNGNPFNRPPQYPSPRSPLHHFSSSHAQQPGQQQQPPSILAINQQQSDPKWTNSSQLHSHSPDGQAKP 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6006833 6010384 + CmoCh09G010900.1 Cmo09g01090 389092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01090 352 MobiDBLite consensus disorder prediction 25 39 - -
Cmo09g01090 352 MobiDBLite consensus disorder prediction 285 352 - -
Cmo09g01090 352 Coils Coil 202 229 - -
Cmo09g01090 352 MobiDBLite consensus disorder prediction 301 346 - -
Cmo09g01090 352 Gene3D - 185 237 - -
Cmo09g01090 352 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 6 330 - -
Cmo09g01090 352 CDD bZIP_plant_RF2 187 236 IPR044759 GO:0003700|GO:0006355
Cmo09g01090 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 247 IPR004827 GO:0003700|GO:0006355
Cmo09g01090 352 Coils Coil 237 257 - -
Cmo09g01090 352 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 330 - -
Cmo09g01090 352 SUPERFAMILY Leucine zipper domain 186 237 IPR046347 GO:0003700|GO:0006355
Cmo09g01090 352 MobiDBLite consensus disorder prediction 1 39 - -
Cmo09g01090 352 SMART brlzneu 182 246 IPR004827 GO:0003700|GO:0006355
Cmo09g01090 352 Pfam bZIP transcription factor 186 238 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02559 Cmo-Chr4:18754570 Cmo09g01090 Cmo-Chr9:6006833 1.75E-26 dispersed
Cmo04g02560 Cmo-Chr4:18755359 Cmo09g01090 Cmo-Chr9:6006833 1.14E-70 dispersed
Cmo09g01090 Cmo-Chr9:6006833 Cmo20g00333 Cmo-Chr20:1631748 4.60E-60 dispersed
Cmo09g01090 Cmo-Chr9:6006833 Cmo01g01038 Cmo-Chr1:8193096 1.23E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10393 PF00170 bZIP_1 2.20E-07 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01090 K20557 - csv:101207973 543.117