Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01096 ATGTCTAGCACTGCTGGTCAGGTCATCAAATGCAAAGCTGCTGTGGCTTGGGAGGCTGGAAAGCCACTAGTGATTGAGGAAGTGGAAGTGGCGCCGCCGCAAGCCAATGAAGTTAGAGTGAAGATCCTTTTCACAGCTCTTTGTCACACCGATGTTTATTTCTGGGAAGCGAAGGGCCAAACTCCTTTGTTTCCTCGCATTTTTGGACATGAAGCTGGAGGTGTTGTTGAGAGTGTTGGAGAAGGCGTGAAAGATCTTCAACCAGGAGATCATGTTCTTCCTGTTTTCACTGGTGAATGTGGCGATTGTCGTCATTGTAAATCAGAAGAGAGCAATATGTGCGATCTTCTTCGAATCAATACTGATCGTGGAGTTATGATCAGTGATGGCAAGACCAGATTCTCCAAAAATGGACAACCAATTCATCATTTCGTTGGAACCTCCACTTTTAGTGAATACACTGTTATTCATTTTGGCTGTTTGGCTAAGATCAATCCTGCTGCTCCTCTTGACAAAGTCTGCGTTCTTAGCTGCGGAATTTCCACAGGCTTTGGTGCCACTGTGAATGTTGCAAAGCCTAAAAAGGGTCAATCTGTTGCTATCTTTGGCCTTGGAGCTGTTGGGCTTGCTGCTGCTGAAGGGGCAAGAGTTTCCGGGGCATCTAAGATCATTGGTGTTGATTTGAACCCGGCTAGATTCGAAGAAGGTGCAGTCAAATTACTTGTTTTGGATGAATTATCATGTACCATATACTGTATTGATTTGATTTGTTTGATCTTTGCAGCAAAGAAATTTGGTTGCAATGAATTTGTTAACCCAAAGGATCACAGCAAGCCAGTTCAAGAGGTGATTGCTGAGATGACGAACGGAGGAGTCGACCGAAGCGTCGAATGCACCGGAAGCATCCAAGCAATGATCTCGGCATTCGAATGCGTTCATGATGGGTGGGGTGTTGCAGTACTAGTGGGAGTCCCAAACAAAGACGACGCATTCAAAACTCATCCTATGAATTTCCTCAACGAAAGAACTCTAAAGGGTACGTTCTTCGGCAACTACAAGCCTCGATCCGACATTCCCGGGGTCGTCGAGAAGTACCTGAAGAAGGAGATGGAATTGGAGAAATTCATAACTCATTCAGTGCCGTTCTCTGAGATCAACAAGGCGTTTGATTACATGCTGAAAGGGGAGTCCATTCGATGCATCATTCGCATGGGAGACTGA 1221 45.45 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPLFPRIFGHEAGGVVESVGEGVKDLQPGDHVLPVFTGECGDCRHCKSEESNMCDLLRINTDRGVMISDGKTRFSKNGQPIHHFVGTSTFSEYTVIHFGCLAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFGLGAVGLAAAEGARVSGASKIIGVDLNPARFEEGAVKLLVLDELSCTIYCIDLICLIFAAKKFGCNEFVNPKDHSKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNFLNERTLKGTFFGNYKPRSDIPGVVEKYLKKEMELEKFITHSVPFSEINKAFDYMLKGESIRCIIRMGD 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6085628 6087773 + CmoCh09G010960.1 Cmo09g01096 389098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01096 406 Gene3D - 183 347 - -
Cmo09g01096 406 Pfam Zinc-binding dehydrogenase 261 360 IPR013149 -
Cmo09g01096 406 PANTHER ALCOHOL DEHYDROGENASE 1 4 235 - -
Cmo09g01096 406 PANTHER ALCOHOL DEHYDROGENASE 1 252 404 - -
Cmo09g01096 406 SUPERFAMILY GroES-like 354 403 IPR011032 -
Cmo09g01096 406 CDD alcohol_DH_plants 9 403 - -
Cmo09g01096 406 PANTHER ALCOHOL DEHYDROGENASE 4 235 - -
Cmo09g01096 406 PANTHER ALCOHOL DEHYDROGENASE 252 404 - -
Cmo09g01096 406 SUPERFAMILY GroES-like 4 186 IPR011032 -
Cmo09g01096 406 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cmo09g01096 406 Pfam Alcohol dehydrogenase GroES-like domain 36 157 IPR013154 -
Cmo09g01096 406 Gene3D - 14 399 - -
Cmo09g01096 406 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 351 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01096 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - csv:101206036 702.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01034 Cmo09g01096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01035 Cmo-Chr1:8090366 Cmo09g01096 Cmo-Chr9:6085628 0 dispersed
Cmo01g01036 Cmo-Chr1:8116082 Cmo09g01096 Cmo-Chr9:6085628 0 dispersed
Cmo09g01096 Cmo-Chr9:6085628 Cmo15g01385 Cmo-Chr15:9428590 3.09E-130 dispersed
Cmo07g01418 Cmo-Chr7:8152028 Cmo09g01096 Cmo-Chr9:6085628 5.67E-17 transposed
Cmo08g00048 Cmo-Chr8:260141 Cmo09g01096 Cmo-Chr9:6085628 8.47E-162 transposed
Cmo13g00970 Cmo-Chr13:8362214 Cmo09g01096 Cmo-Chr9:6085628 5.55E-138 transposed
Cmo01g01034 Cmo-Chr1:8082928 Cmo09g01096 Cmo-Chr9:6085628 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01096 Cmo_Chr09 FPKM 6.114198 5.089636 3.987141 4.129697 6.242719 6.215805 4.6535 7.321752 5.58383 5.496304