Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01097 ATGAAGTCGATGCGTCTCAACTCCTTCACATGTTCTTCCCGGCTTCCATCCTTCTTAAATCCACCCAATGTTGCCAGAATCGCCTCCTGTTCCACTTCAGATTGCATTTCGAACCAATTTTTATACGAAGATCACAATCCCCATTCAGAGCTTCTGCAACTTTGCTTGCATCACTGCAGGCGAATCAAAGCCCACAACCTGTTCGATGAAAAGCCTGAACCAGTTCTTCAAGTATTGAGAACAGCGAAGGTCATTCATTCGAAGAGTTTGAAGATTGGAGTTGGGCTCAATGGGTTACTGGGCAATGCAATTGTTGATCTCTATGTCAAATGCGGCAATGTGGATTATGCTCAGAAGGTATTTTCCCGGCTGGAGAAGAAGGATGTATTTGCCTGGAATTCGGTGCTTTCTATGTACTCTAAGCATGGGTTATTTGCAACTGTTGTTGAATCTTTTGTGTCTATGTGGAATGATGGGGTTCGGCCTAATGAGTTCACGTTTGCGATGGTCTTATCTGCTTGTTCTAGGTTGTTGGATGTTAACTATGGTAGACAAGTGCATTGTGGTGTTTTTAAAATGGGGTTTGGGTTTAGTTCTTTTTGTCAAGGTGGGTTAATTGATATGTATGCCAAATGCCATGATCTAAGAGATGCTCGCTTGGTGTTTGATGGGGCAATTTATTTGGATACTGTTTCATGGACAGCCTTGATTGCTGGGTATGTTCAAGATGGTTTACCTGAGGAGGCAGTCAAAGTGTTTGATAGAATGCAGACAGTTGGACTTGTACCTGATCAGATAGCGCTTGTAACTGTTATAAATGCTTATGTTGCTCTAGATAGGCTTGGTGATGCTCGTAAGTTGTTTGCCCAGTTGCCCAATCCTAATATTGTAGCTTGGAATGTGATGATTTCAGGGCATGCAAAGAGAGGATTTGCAGAGGAAGCCATTTCATTTTTTCTTGAATTGAAGAGAACTGGCCTAAAAGCCACTAGGTCTACTATAGGAAGTGTTTTGAGTGCAATTGCTAGTTTATCGATGCTGAATTATGGCTTAATGGTTCATTCTCAGGTGATTAAGGAAGGGTTAAATGATAATGTGTATGTAGGAAGTGCATTGGTGAATATGTATGCTAAATGTGAAAAAATGGATGCTGCGAATGAAGTGTTCAATTCTTTAGAAGAGAGAAATATTGTCTTGTGGAATGCTATGCTTGCAGGTTTCGCGCAGAACGGACTTGCTCATGAAGTGATGGATTTGTTCTCATATATGAAACGGTATGGACCTCAGCCTGATGAGTTTACCTTCACTAGTATTTTCAGTGCATGTGCCTCCTTGCAGTATCTCGATTTCGGTCGTCAACTTCATAACGTTATGATCAAAAACAAGTTTGTATCTAATCTATTTGTTGCAAATGCGTTGGTAGACATGTATGCTAAATCTGGGGCTTTAAAGGAAGCAAGAAAACAGTTTGAGTTGATGAAGATTCATGACAATGTTTCATGGAATGCAATAATTGTAGGATATGTTCAGGAAGAGTATAATGATGAAGCTTTCTCCATGTTTCGAAGAATGGTTTGCAATGGAGATCTTCCAGATGAGGTGTCTTTAGCCAGTACAGTGAGTGCTTGTGCAAATGTTCAGGAGTTGAAACCAGGGCAACAATGTCACTGTCTCTTAGTTAAAGTTGGTTTAGATACAAGCATTTGTGCTGGAAGTTCCCTCATTGACATGTATGTCAAGTGCGGGGTTCTTTCGGCAGCTCGGGATGTCTTTTATTCTATGCCGTGTCGAAGTGTCGTCTCAGTAAACGCTCTGATTGCTGGCTACACTGTGAACCATTTAGAGGAAGCTATTTATCTATTTCAAGAGATGCAGATGGTTGGACTTAAACCTACGGAAGTAACATTTGCAGGGCTTTTAGATGGATGCGATGGAGCATCTTTGCTGAAACTAGGAAGGCAAGTTCACTGTCAAGTTATTAAGAGGGGTTTTCTGTTAGGTAGGGAAATGGTGTGTGTGTCTCTCTTGTGCATGTATATGAACTCCCAAAGACTCTCAGACTCGGAAACACTCTTCTCTGAGTTGCAGTATCCAAAAAGTTTAGTTTTATGGACTGCTTTCATTTCAGGATGTGCACAAAACAATCACTATGAGAAGGCGTTGCGATTCTATCAACATATGCGATCTGAGAATATGTTACCCGACCAAGCAATGTTTGCGAGTGTTCTTCGAGCATGCTCTGGATTGTCTTCTCTACAAAACGGTCAAGAGATTCATTCCCTTATCTTCCATACGGGCTTTAACATGGATGAAATCACCTGTAGTTCCCTTATTGATATGTATGCAAAATGTGGTGATGTTGAAAGCTCTGTTAAAGTTTTTCATGAAATGCGTTGTAGAAACAGTGTCGTTTCTTGGAACTCCATGATAGTTGGACTTGCAAAGAATGGCTATTCAGAAGAAGCACTTGAAATTTTCAGGCAGATGGAGCAACAATCTATCATGCCTGATGATGTTACGTTCCTTGGTGTTCTTTCTGCCTGTAGCCATGCAGGAAGAGTGTCCGAAGGCCGAAAGATCTTCGACGTGATGGTTAGCCATTACAGGTTACAGCCAAGAGTTGATCATTTGGGGTGTATGGTAGACATTCTTGGGAGATGGGGTTTCCTTAATGAAGCTGAGGAGTTCATCAACAGACTCAGATGCAAAGCAGATCCGATGCTCTGGTCGACTTTGCTCGGAGCTTGCAGAAAGCATGGAGATGAAGTTAGGGGGAGGCGTGCGGCTGAGAAACTTATGGAACTGAAACCACAAAGTTCTTCACCGTATGTGCTTCTCTCTAGCATATACGCTGCATCAGAGAATTGGAAACAAGCTGACTCTTTAAGGAGGGAAATGAAATCAAAGGGAGTGAAAAAGTTGCCCGGATACAGCTGGATAGAGCCAGGAAGAAGCGCACGAGGCAGCTCGTGTGCAATTGGTAATGGAGAACCAAAGGAACTAAGCTGCCTATCAGTCACTCTTTTAAGGATGCATATGAAGTAA 3045 41.97 MKSMRLNSFTCSSRLPSFLNPPNVARIASCSTSDCISNQFLYEDHNPHSELLQLCLHHCRRIKAHNLFDEKPEPVLQVLRTAKVIHSKSLKIGVGLNGLLGNAIVDLYVKCGNVDYAQKVFSRLEKKDVFAWNSVLSMYSKHGLFATVVESFVSMWNDGVRPNEFTFAMVLSACSRLLDVNYGRQVHCGVFKMGFGFSSFCQGGLIDMYAKCHDLRDARLVFDGAIYLDTVSWTALIAGYVQDGLPEEAVKVFDRMQTVGLVPDQIALVTVINAYVALDRLGDARKLFAQLPNPNIVAWNVMISGHAKRGFAEEAISFFLELKRTGLKATRSTIGSVLSAIASLSMLNYGLMVHSQVIKEGLNDNVYVGSALVNMYAKCEKMDAANEVFNSLEERNIVLWNAMLAGFAQNGLAHEVMDLFSYMKRYGPQPDEFTFTSIFSACASLQYLDFGRQLHNVMIKNKFVSNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFSMFRRMVCNGDLPDEVSLASTVSACANVQELKPGQQCHCLLVKVGLDTSICAGSSLIDMYVKCGVLSAARDVFYSMPCRSVVSVNALIAGYTVNHLEEAIYLFQEMQMVGLKPTEVTFAGLLDGCDGASLLKLGRQVHCQVIKRGFLLGREMVCVSLLCMYMNSQRLSDSETLFSELQYPKSLVLWTAFISGCAQNNHYEKALRFYQHMRSENMLPDQAMFASVLRACSGLSSLQNGQEIHSLIFHTGFNMDEITCSSLIDMYAKCGDVESSVKVFHEMRCRNSVVSWNSMIVGLAKNGYSEEALEIFRQMEQQSIMPDDVTFLGVLSACSHAGRVSEGRKIFDVMVSHYRLQPRVDHLGCMVDILGRWGFLNEAEEFINRLRCKADPMLWSTLLGACRKHGDEVRGRRAAEKLMELKPQSSSPYVLLSSIYAASENWKQADSLRREMKSKGVKKLPGYSWIEPGRSARGSSCAIGNGEPKELSCLSVTLLRMHMK 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6092502 6098486 + CmoCh09G010970.1 Cmo09g01097 389099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 800 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 804 837 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 772 805 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 398 432 IPR002885 -
Cmo09g01097 1014 TIGRFAM PPR: pentatricopeptide repeat domain 297 329 IPR002885 -
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 595 665 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 496 595 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 395 443 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 127 175 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 802 849 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 497 544 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 598 643 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 294 341 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat family 229 275 IPR002885 -
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 89 214 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 278 495 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 670 762 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 766 983 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 205 279 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 595 665 - -
Cmo09g01097 1014 PANTHER OSJNBB0070J16.5 PROTEIN 496 595 - -
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat 572 597 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat 772 801 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat 702 731 IPR002885 -
Cmo09g01097 1014 Pfam PPR repeat 471 494 IPR002885 -
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 556 651 IPR011990 GO:0005515
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 347 446 IPR011990 GO:0005515
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 447 555 IPR011990 GO:0005515
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 653 782 IPR011990 GO:0005515
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Cmo09g01097 1014 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 38 193 IPR011990 GO:0005515
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 89 214 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 205 279 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 278 495 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 766 983 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 PANTHER OS07G0578800 PROTEIN-RELATED 670 762 IPR045215 GO:0003723|GO:0009451
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 818 1004 IPR011990 GO:0005515
Cmo09g01097 1014 Gene3D Tetratricopeptide repeat domain 203 346 IPR011990 GO:0005515
Cmo09g01097 1014 Pfam E motif 921 981 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01097 - - - cmax:111473755 1903.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g01097 Cmo12g00334 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00071 Cmo-Chr2:372159 Cmo09g01097 Cmo-Chr9:6092502 2.43E-07 dispersed
Cmo09g01097 Cmo-Chr9:6092502 Cmo18g01256 Cmo-Chr18:12305510 2.41E-30 dispersed
Cmo09g01097 Cmo-Chr9:6092502 Cmo06g00355 Cmo-Chr6:1723935 1.76E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011120 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 3 1 0 1 0 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01097 Cmo_Chr09 FPKM 102.506737 100.340187 284.04361 285.467987 4.094943 4.682223 4.10883 501.41391 547.272095 439.878082