Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01118 ATGCCTTCTTTTGTTGGTGGAGCTCAAGCTAAAGATGTCTCTTCTCTTCACCTTCCTTCTTCCTCTTCTTGTCGTCCTCTAACTCTTAAGTTTGTAGATGTGAGTTATCGAGTGAAGGTGACGAACAAGAGTGGAAATACTATTGGACGGATTTTTGGATGTGGGTCGGGCGATGGGGCGGCGCCGTCCGTTCAAGAACGGAGTATTCTTCATGGGGTTTCTGGGATGGTGTCGCCGGGAGAGACTTTGGCCATTCTTGGCCCGTCCGGAAGTGGCAAGTCAACTCTTCTTAATGCTCTTGCGGGAAGATTCCAGGGCGACGGTCTAACCGGGTCAGTGTTGGCTAACGGTCAAAAGCTTTCCAAATCGATACTCCGTTGGACCGGGTTCGTGACACAGGACGACGTCCTCTACCCACACTTAACCGTCCGAGAAACTCTCATATTTTGCTCTCTCCTCCGACTACCTCTTTCCCTCTCAAAGCAAGACAAAGTCGCAGTGGCCGAGTCGGTGATCGTCGAACTTGGGCTAACGAAATGCCAAAACACAATCATCGGAAACGCCTTCATCCGTGGCGTCTCGGGTGGAGAACGAAAAAGAGTGAGCATAGGCCACGAGATGCTCATAAACCCAAGCCTACTAATTCTCGACGAGCCGACATCAGGGCTAGACTCAACCGCGGCGCACCGGCTGGTGACCACCATGGCTGCGCTGGCTCACAAGGGGAAGACCATAGTGACCTCAATTCACCAACCATCGAGCCGGGTGTACCAAACCTTTGACAAGGTGCTGGTGCTGTCGGAAGGGCGATGCTTGTATTATGGGAAAGGAAGTGAAGCAATGAGCTATTTTGAGTCTATTGGGTTCACACCTTCTTTTCCCATGAACCCAGCTGATTTTCTCCTCGATCTCGCCAATGGTGTATACCAAGTTGAAAATACAAGTGAAGGAGAGAAACCCAACATGAAGCAAACCCTAATTACTTCTTACAACACTCTTTTGGCTCCAAGAGTAAAGGCAGCTTGCATGGAGACATCAACGTTGCTTGAAACGAAAACTCGTGAACGATTGACTTGCAAAACTAGTCTCCTCATGTGGTGTAACCAATTGAGTATCTTACTTCAGAGAAATCTCAAAGAACGAAAACACGAGACCTTCAATGGCTTGAGAGTTTTTCAAGTTATCACTGCGGCGATGCTCGCGGGATTGATGTGGTGGCACTCGGATTTTCGAGATATTCAAGATCGTCTCGGCCTTCTTTTCTTCATTTCAATTTTCTGGGGAGTTTTCCCTTCCTTTAACGCGGTTTTTGCATTCCCTCAAGAGCGAGCAATCTTTCTTAAGGAACGAGCTTCGGGTTTGTACACGCTATCGTCATATTTCATGGCTAGAGTCATTGGAGACCTTCCTATGGAGCTCATCCTTCCAACAATTTTCCTCACCATTGCATATTGGATGACCGAGCTAAAACCAGAGCTCGGTGCCTTTCTCTTGACGTTGTCGGTCCTCCTTGGCTACGTTCTCGTATCGCAAGGGCTTGGCCTTGCGTTAGGTGCAACAATCATGGATGCTAAACAAGCTTCCACCGTAGTAACCGTGACGATGTTGGCATTTGTCTTGACAGGAGGTTTTTATGTACACAAAGTACCAACGTGCATGACTTGGATCAAATACATTTCAGCGACATATTACAGTTATAGGCTCTTCATCAACGTGCAATATGGCACCGGAGATAAGATATGGTCGTTGCTCGGTTGCTCACGACATGGAACCGACAAAGCAAGGTGTAACTTTGTGGAAGAAGATGTGGTAGGGCAAATAAGCCCTGAATTGAGCATTGGAGCTTTGTTATTTATGTTTGTGGGGTATAGGTTATTGGCATATTTGGCTTTGAGACGCATCAAATAG 1908 47.48 MPSFVGGAQAKDVSSLHLPSSSSCRPLTLKFVDVSYRVKVTNKSGNTIGRIFGCGSGDGAAPSVQERSILHGVSGMVSPGETLAILGPSGSGKSTLLNALAGRFQGDGLTGSVLANGQKLSKSILRWTGFVTQDDVLYPHLTVRETLIFCSLLRLPLSLSKQDKVAVAESVIVELGLTKCQNTIIGNAFIRGVSGGERKRVSIGHEMLINPSLLILDEPTSGLDSTAAHRLVTTMAALAHKGKTIVTSIHQPSSRVYQTFDKVLVLSEGRCLYYGKGSEAMSYFESIGFTPSFPMNPADFLLDLANGVYQVENTSEGEKPNMKQTLITSYNTLLAPRVKAACMETSTLLETKTRERLTCKTSLLMWCNQLSILLQRNLKERKHETFNGLRVFQVITAAMLAGLMWWHSDFRDIQDRLGLLFFISIFWGVFPSFNAVFAFPQERAIFLKERASGLYTLSSYFMARVIGDLPMELILPTIFLTIAYWMTELKPELGAFLLTLSVLLGYVLVSQGLGLALGATIMDAKQASTVVTVTMLAFVLTGGFYVHKVPTCMTWIKYISATYYSYRLFINVQYGTGDKIWSLLGCSRHGTDKARCNFVEEDVVGQISPELSIGALLFMFVGYRLLAYLALRRIK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6352818 6358473 - CmoCh09G011180.1 Cmo09g01118 389120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01118 635 Gene3D - 59 287 IPR027417 -
Cmo09g01118 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 29 293 IPR003439 GO:0005524
Cmo09g01118 635 Pfam ABC transporter 70 221 IPR003439 GO:0005524
Cmo09g01118 635 Pfam ABC-2 type transporter 369 574 IPR013525 GO:0016020|GO:0140359
Cmo09g01118 635 Pfam ABC-2 type transporter 250 325 IPR043926 GO:0140359
Cmo09g01118 635 CDD ABCG_EPDR 62 275 - -
Cmo09g01118 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 288 IPR027417 -
Cmo09g01118 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 12 633 - -
Cmo09g01118 635 SMART AAA_5 79 270 IPR003593 -
Cmo09g01118 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01118 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101214873 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00647 Cmo-Chr4:3214782 Cmo09g01118 Cmo-Chr9:6352818 0 dispersed
Cmo09g01118 Cmo-Chr9:6352818 Cmo15g01499 Cmo-Chr15:10169617 0 dispersed
Cmo01g01018 Cmo-Chr1:7830795 Cmo09g01118 Cmo-Chr9:6352818 1.70E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1240 . . . . . . . . . . . Cma09g01112 . . . . Cpe13g00716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . Cpe02g00910 Bhi09g01524 . . . . Mch11g1474 . . . . . . . . . . . .
Vvi18g1424 Blo01g01706 . . . . . . . . . . Cma09g01112 . . . . . . . . . . . . . . . . . . . Cone4ag1210 . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009054 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01118 Cmo_Chr09 FPKM 5.735395 11.627457 0.0 8.631296 14.940104 0.0 14.881177 9.24489 9.130913 10.53605