Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01150 ATGGCGGATGTGATGCTGATGAAAGATATTGAGGAAACGGCTGATCGGCTTGGGATAGATCTCGCCCAAGTTGATTTTGACGCCATTCGTCTCCCTCCCGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATTAAGGATGATGGCCTGTGGATGCCTGTTGATCCTTCTACACAAAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTTGATAGATTTATGAAAGTCCCAGATGAGTGGGCTCCTCCTGAAATCAACCCATATACTCCTGGGGAGAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTTTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACCGAGAGTTTTGTGCAGTGGTCCTCGTTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAAGTACCTTCAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAAAAATATCTGGTAACATACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTTCCACTGGAGGAACTGGTGGTGTTGCCGGCTTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGAAGATAAATACTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACCGAGACTTTCTCTCTTATCGACAAAAAGTCTTTGAAGGTCGAAAATGTTATGGATTTTTGCTGGTCCCCTACAGATCCCATTATTGCACTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTCCAAATCCCGAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACGAAGACAAAGAAAAGCACGTACACAGGGTTCGAGCTATTCCGCATAAAGGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAACGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGGCATAGGTTTGCAGTCATTCACGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCGATGCGAAGCACTCACAACAGTGGCCGAGTGTCGAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGAAGATTCATTCTTCTTGCTGGCTTGAAAGGTTTCAACGGGCAGTTGGAGTTCTACAACGTCGATGAGCTGGAGACGATGGCAACTGCAGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTACGTTGCAACTGCTGTAACTTCAGTCCACGAGATGGAAAACGGTTTCAACATATGGTCCTTTAATGGAAAGCTCCTCTATCGAATCTTGAAGGATCACTTCTTTCAGTTCGCATGGCGACCAAGGCCACCATCCTTCTTGACCCCGGAGAAAGAGGAAGAGATAGCTAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGACGTATCTATGCTACTGAGCGAGCAGGAGCGCGAGAAACGAAGAATGTTGAAGGAGGAGTGGGAGAAGTGGTTGAATGAATGGAAGAGATTGCACGATGAAGAGAAGCTGTTGCGACAGAAGCTTCGGGATGGTGAAGCCAGTGATGAAGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTCGAAGAGATTTTGGACGTGACGGAGGAAGTTTTGTCGGATGATTTTGATCAGGAATGA 2160 45.23 MADVMLMKDIEETADRLGIDLAQVDFDAIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPSTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSSLGTYLATIHRQGAAVWGGASTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFSTGGTGGVAGLSWPVFRWGGGKEDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFILLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQEREKRRMLKEEWEKWLNEWKRLHDEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVTEEVLSDDFDQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7175635 7180301 - CmoCh09G011500.1 Cmo09g01150 389152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01150 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo09g01150 719 CDD RRM_eIF3B 59 143 IPR034363 -
Cmo09g01150 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo09g01150 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cmo09g01150 719 Gene3D - 182 381 IPR015943 GO:0005515
Cmo09g01150 719 Gene3D - 410 624 IPR015943 GO:0005515
Cmo09g01150 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Cmo09g01150 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Cmo09g01150 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cmo09g01150 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo09g01150 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Cmo09g01150 719 Coils Coil 687 707 - -
Cmo09g01150 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cmo09g01150 719 Gene3D - 55 154 IPR012677 -
Cmo09g01150 719 SUPERFAMILY RNA-binding domain, RBD 58 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01150 Cmo-Chr9:7175635 Cmo11g00028 Cmo-Chr11:119332 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01150 K03253 - csv:101213144 1409.82