Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01152 ATGGGTGTGATCGATTTTTCAAACCCTTGCACCCGTATCCTTCCTGCATCTGAGGCATCGCGTCGAGCCAATTGCTCAGTTGCTGGGCGAAGGAAGTGGGCTGTTGCTATGACATCTCAAATTCCAGTAGAACAGGTTCATGTGAGTCAACAAAGGTTGGCTGCTGGTTTGTTTGTTTGCATTATTGTGTTGGTGATAACACCTCGGGTTGATCTGGCAATGGGGCATTTGACTGATGTGAATAGAATTGAAAGCGGCAGTGATTTGAACCCTGTGGTTCTTGAAGCCTTGGGAACAATGAAATTCCCAAACATCTATCCCGATCCTGAAAGTCGTCGATTGCGAGCAGCACTCGCCATAGATTCTGGTCTCGAATCAGATTATATTCTTGTGGGATGTGGTGCAGACGAGCTTATCGATCTGATTATGCGATGTGTGTTGGATCCTGGTGATAAAATTGTAGACTGCCCTCCTACCTTCACAATGTATGAATTTGATGCTGCTGTCAATGGTGCTCTTGTGATTAAAGTTCTTGCAATATCTGTTGCCTATGGTGTTCTTGCAGTTCCAAGGAAGCCAGACTTTTCTTTGAATGTGGATCTCATAAAAGATGTTGTTGTGAAGGAAAAACCAAAGTGTATATTCCTCACGTCTCCTAATAATCCTGATGGGAGTTTAATTAGTGATGAAGTTCTGTTGAAAATTCTTGAGCTCCCCATACTAGTTGTTCTAGATGAAGCATATATAGATTTTTCTTCAGTTGAATCAAAGATGCAGTGGGTGAAGAAATATGACAATCTGATTGTACTTAGAACTTTTAGCAAAAGAGCAGGTTTAGCTGGACTTCGTGTCGGGTATGGAGCGTTTCCGTTGAGTATCATTGAATATCTCTGGCGAGCTAAGCAACCATATAATGTGTCTGTTGCTGCTGAAATTGCTGGGTGTGCAGCGTTGCAGAACCCTTCCTACTTAGAGAAGGTAAAAAATGATTTGGTACAAGAACGTGAGAGGCTGTTCAATCTTCTAAAGGATGTGCCATTTTTAAATCCATATCCAAGTCACTCTAATTTCATCCTTTGCGAGGTGACTTCAGGAAAGGATGCAAAGAAATTGAAGGAGGACCTAGCAAAAATGGGGGTGATGATTCGTCACTACGATAAGAAAGAGTTAAAAGGCTATGTTCGTGTTACCGCCGGGAAGCCCGAACACACCGATGCTTTGATGGACTGCCTTCGACGTTTATCGTAA 1248 42.71 MGVIDFSNPCTRILPASEASRRANCSVAGRRKWAVAMTSQIPVEQVHVSQQRLAAGLFVCIIVLVITPRVDLAMGHLTDVNRIESGSDLNPVVLEALGTMKFPNIYPDPESRRLRAALAIDSGLESDYILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGALVIKVLAISVAYGVLAVPRKPDFSLNVDLIKDVVVKEKPKCIFLTSPNNPDGSLISDEVLLKILELPILVVLDEAYIDFSSVESKMQWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYNVSVAAEIAGCAALQNPSYLEKVKNDLVQERERLFNLLKDVPFLNPYPSHSNFILCEVTSGKDAKKLKEDLAKMGVMIRHYDKKELKGYVRVTAGKPEHTDALMDCLRRLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7192181 7201900 - CmoCh09G011520.1 Cmo09g01152 389154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01152 415 Pfam Aminotransferase class I and II 104 408 IPR004839 GO:0009058|GO:0030170
Cmo09g01152 415 Gene3D - 106 319 IPR015421 GO:0003824
Cmo09g01152 415 Gene3D Aspartate Aminotransferase, domain 1 88 408 IPR015422 GO:0003824
Cmo09g01152 415 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE 91 414 - -
Cmo09g01152 415 CDD AAT_like 88 413 - -
Cmo09g01152 415 SUPERFAMILY PLP-dependent transferases 95 414 IPR015424 -
Cmo09g01152 415 TIGRFAM hisC: histidinol-phosphate transaminase 93 413 IPR005861 GO:0000105|GO:0004400
Cmo09g01152 415 PANTHER HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED 91 414 - -
Cmo09g01152 415 Coils Coil 324 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01152 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] - csv:101214429 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01681 Cmo-Chr6:11610638 Cmo09g01152 Cmo-Chr9:7192181 0 dispersed
Cmo09g01152 Cmo-Chr9:7192181 Cmo17g01024 Cmo-Chr17:8757493 2.59E-11 dispersed
Cmo09g01152 Cmo-Chr9:7192181 Cmo09g00799 Cmo-Chr9:4089673 1.09E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1399 . . . . . . . . . . . Cma09g01142 . . . . . . . . . . . . . . . . . . . Cone4ag1222 Cone7ag0913 . . . . . . . . . . . . . . . . Cmo09g01152 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003567 1 1 1 1 1 2 2 2 2 1 2 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01152 Cmo_Chr09 FPKM 1.635143 1.656237 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0