Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01158 ATGGAGCCTGAAAATAGGTTATGTAGCTCTGAAGTTTGGGCAAAATCTTCATCGTTTCCTAATATTAATGTTCAGCAACCTTCACAGAAATGGGTAGATCCTTCCATTTTAGACTATGATATGGAACAACCTTTCCAAGAATTCGAAGAACGGATCGAATCGAAGGCCTCCCTAACGTGTAGCCCGAATCAACGAATCGAAATCTTAGATAAAGATAGTAATGAGCTGAATGCAGGACTTCTAGCTAGTAAAATTCAAGATTGGGACCCGAGAGCGATGCTGAATAATCTTTCATTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTTGGCCGGAGGAACCAAGCCTTGGGGAGTCCCGATGAACTCGTAGTTCAGCAACAACAGCTGATAACGGCTGATCTAACTTCGATTATTGTTCAGTTAATCTCGACAGCTGGTAGTCTGCTTCCTTCTGTAAAGCATAAGTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGCTTGAGCAACTCGAGCAGCTCGACAGGGTTCTTTTTGCATCTGGACCTAGGACTAATAGTGGTGATGGAACCAAACTCCCTGAGCTTCCAACCCAAGTAGAGGAAAATAGCAAATGTGGGAAGGAACAGAACATGGCTGTTGAAGAAAACGAATCAAAGGACGAAGAAGACGCCGATGAACACGAGAATCTCCCACCCGGTTCATACGAAATACTGCAGCTAGAAAAAGAAGAGATTCTAGCACCTCACACACATTTCTGTCCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCACGGTGACGAGTATAAAACCGCAGCTGCCCTGGCTAAACCGAACAAAGAGTCGAGTTCCGAGACGATGCTAATCAAGAGATATTCCTGTCCGTTCACCGGCTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACCATTCTATGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTTCACTTGCAGCAAATGTAACTCTAAGAAATTCTCTGTAATTGCTGATCTGAAAACACATGAGAAACACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACAACGTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCGATTCCGCTCGACGAGTCGAAGGGAGCAGCCGTGTCGTTCGATCGAGGAGAACGCTCGGATAAGCTTAGGAGCCTAAATTTCAGTTTCGGGTCGATTGCTACGGGTGGAAGCTCTGTTGAAACCATAGCAGATGCAAAAGCTGGTGTTGATGATCCTCTTGGTTGCTTTTCACCTCTGAACTTCGAATCGTGTAATTTCGAGGGGTTTCACGAGTTTCCTCGACCGCCATTTGAGAATGTAGACAATGTGTTTTCATTCCTTAGCCCGGGGTCGGGTAATTACACCGAAAAATCTGGTGCGGAATCGAGCTCTAATAACCTTGAATGA 1521 44.97 MEPENRLCSSEVWAKSSSFPNINVQQPSQKWVDPSILDYDMEQPFQEFEERIESKASLTCSPNQRIEILDKDSNELNAGLLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRNQALGSPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHKLSAAVPPVGQLEQLEQLDRVLFASGPRTNSGDGTKLPELPTQVEENSKCGKEQNMAVEENESKDEEDADEHENLPPGSYEILQLEKEEILAPHTHFCPICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAAVSFDRGERSDKLRSLNFSFGSIATGGSSVETIADAKAGVDDPLGCFSPLNFESCNFEGFHEFPRPPFENVDNVFSFLSPGSGNYTEKSGAESSSNNLE 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7299396 7300916 + CmoCh09G011580.1 Cmo09g01158 389160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01158 506 SUPERFAMILY beta-beta-alpha zinc fingers 255 280 IPR036236 -
Cmo09g01158 506 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Cmo09g01158 506 Gene3D Classic Zinc Finger 240 311 - -
Cmo09g01158 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Cmo09g01158 506 SMART c2h2final6 305 338 IPR013087 -
Cmo09g01158 506 SMART c2h2final6 343 365 IPR013087 -
Cmo09g01158 506 SMART c2h2final6 256 278 IPR013087 -
Cmo09g01158 506 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 489 - -
Cmo09g01158 506 MobiDBLite consensus disorder prediction 184 236 - -
Cmo09g01158 506 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 489 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00851 Cmo-Chr3:6712504 Cmo09g01158 Cmo-Chr9:7299396 3.06E-73 dispersed
Cmo07g00551 Cmo-Chr7:2481107 Cmo09g01158 Cmo-Chr9:7299396 3.70E-78 dispersed
Cmo09g01158 Cmo-Chr9:7299396 Cmo13g00264 Cmo-Chr13:2191858 5.16E-71 dispersed
Cmo01g00971 Cmo-Chr1:6226646 Cmo09g01158 Cmo-Chr9:7299396 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10397 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01158 - - csv:101220745 914.064