Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01160 ATGATAAAGCAAGCGCACTCATTGATTCAAATTCCCAACGAGCTCCAGTTCATCACAGCCATTACCAGATTCCAATTCCGTTCATCGATCCATCATTTCTCTGCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGGAATCATCGTCGCCGGTCGCCCATGGCCGCCTCCGCCGCTGGTAACCCTTCATCCTCCTCTTCGTCCTCCTCCAACCCTTTCATTTTCTCCCCCGATTCTCCCCCTAGACTCGCTCTCACACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAAGGAGAAGCTCCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCCAGAGAATAACCGCATCGGATATGAAGAAAAATTGCTCTGTGGCTCTTGACAATGTCAACATCAGTAAGAATCGTTACACCGATGTATTACCCTTTGACGAGACTAGAGTTGTGCTCGACTCTTGTAAGGATTACAGACCTTCTGCAAAGGGTTATATCAATGCAAGCTTTATTTCCAGTTCCTCCTCAGAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCGTTACCACACACTTATGAGGATTTCTGGGAGATGACGGTGAAGTGTGGAGATTACTTTCCAGCTGAAGATGGTAGTAGAGATTTTGGTAATCTAGTGGTAGTCTCCAAATGGATAAAATCTTCCAATTCCTCTCTTATACTGCGCCATTTGGAAGTGAACCATAAAGAGTCAGAAGAACGTGTGGCTGTTCTACATATTCAGTACCCAGAATGGCCCGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCACCCGATCTCGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGAAGAACTGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTATTGGAGACTTGTCTGCTTTAGATCTTGTCAGTACCATTTTTACATTTAGATCCCAGCGAATTGGAATGGTTCAAACACTGGATCAATACTTTTTCTGCTATAGAACCATCGTTGATCAACTACAAGACCTTATATCTGTCCCACAGTAG 1119 45.4 MIKQAHSLIQIPNELQFITAITRFQFRSSIHHFSAFQIRPLGNLTSTRSRNHRRRSPMAASAAGNPSSSSSSSSNPFIFSPDSPPRLALTPHQIKLCSEALEAFKEKLQMPDVINQEFARLQAQRITASDMKKNCSVALDNVNISKNRYTDVLPFDETRVVLDSCKDYRPSAKGYINASFISSSSSESLSKFIATQGPLPHTYEDFWEMTVKCGDYFPAEDGSRDFGNLVVVSKWIKSSNSSLILRHLEVNHKESEERVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILIGDLSALDLVSTIFTFRSQRIGMVQTLDQYFFCYRTIVDQLQDLISVPQ 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7325057 7337632 - CmoCh09G011600.1 Cmo09g01160 389162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01160 372 ProSiteProfiles PTP type protein phosphatase domain profile. 114 363 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 Pfam Protein-tyrosine phosphatase 211 361 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 Pfam Protein-tyrosine phosphatase 143 210 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 211 369 - -
Cmo09g01160 372 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 59 210 - -
Cmo09g01160 372 ProSitePatterns Tyrosine specific protein phosphatases active site. 300 310 IPR016130 GO:0016311|GO:0016791
Cmo09g01160 372 PRINTS Protein tyrosine phosphatase signature 346 356 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 PRINTS Protein tyrosine phosphatase signature 297 315 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 PRINTS Protein tyrosine phosphatase signature 174 181 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 PRINTS Protein tyrosine phosphatase signature 192 212 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 PRINTS Protein tyrosine phosphatase signature 330 345 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 279 354 IPR000387 GO:0016311|GO:0016791
Cmo09g01160 372 MobiDBLite consensus disorder prediction 44 77 - -
Cmo09g01160 372 SMART PTPc_3 113 365 IPR000242 GO:0004725|GO:0006470
Cmo09g01160 372 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 366 IPR029021 -
Cmo09g01160 372 Gene3D Protein tyrosine phosphatase superfamily 211 370 IPR029021 -
Cmo09g01160 372 Gene3D Protein tyrosine phosphatase superfamily 88 210 IPR029021 -
Cmo09g01160 372 SMART ptp_7 260 362 IPR003595 -
Cmo09g01160 372 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 211 369 - -
Cmo09g01160 372 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 59 210 - -
Cmo09g01160 372 MobiDBLite consensus disorder prediction 61 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00602 Cmo-Chr6:2968312 Cmo09g01160 Cmo-Chr9:7325057 7.13E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01160 - - bhj:120086129 613.224