Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01162 ATGGAAGTCGGAAACCCAGATGCCTCTTCAATCAAAGCCCTCTCTGTTTCTCAGGTGGTAGAAGAGTTGAAAGAGCTGTGGGGTTTGACCTTTCCGGTAACTACCATGAACTTTTTGGTGTTTTTAAGGCAGGTGGTCTCTGTCTTGTTCTTGGGCAGAATTGGAAGCCTTGAGCTAGCAGGTGGTGCACTTGCTATAGGATTTACAAATATCACAGGCTATTCTATTATGGTGGGTTTAGCCGCTGGGTTGGAACCCTTATGCAGCCAAGCCTACGGAAGTAAAAATTGGGATCTCCTCTGTCTTTCTCTGCAACGCATGATCTTAATCCTCCTCTTTGCAACTATACCCATCGGTTTTCTCTGGATCAACCTTGACAACATCATGGTGTCTTTGGGTCAAGATCACCAAATCACAAGGATGGCGGCTATTTATTGTATTTATTCTCTTCCAGACCTTTTAACAAACACCTTGTTGCAACCCTTAAAAATATTTTTGAGGTCACAAGAGGACACGAAACCCTTGATGTATAGCACTCTGGTAGCAGTTGGCCTTCATGTGCCTCTGAATTACATGATGGTGGTGGCGCTGGGGATGGGAATGCAAGGAGTGGCAATGGCTTCGGTGATAACAAATTTGAACATTGTGGGATTGTTATCTGGATACGTGTGGGTGTGGGGAAGGAAAGGGGTGATGAGATGGACGTTGAAGGTGGGTGAGGTTTGTGGAGGCGTGGGGCCAGTGATGAAGCTAGCTATACCGAGTTGCTTGGGAATATGTTTGGAGTGGTGGTGGTATGAAATAGTGACAGTATTGTCTGGTTATTTATCCAATCCAACGTCGGCTGTGGCCGCCACTGGGATTCTCATCCAAACTACAAGCATGATGTACACCGTACCCCTGGCTCTCTCTGGTTGCGTCTCCTCCAGGTTTGTCAGTCAATATCCGGTATGGTCAACCGGCTGTAATGTACATAACGCAAGGCAGGTAGGGAAGGAGCTGGGAAGTGGAAAGCCAAGGAAAGCGAAAGCTGCAGCCATGGTGGCATTGGGATGCGCACTTGTGGTAGGCGGAATCAACGTGACGTGGACGGTGATTCTCCGGCGGACATGGGCCACATTTTTCACAGACGATATGTCGGTTAAATCATTGGTCTCTTCGGCTTTGCCAATCATAGGTCTCTGTGAGCTTTGGAACTGCCCGCAGACCACTGGATACGGCATCCTTCGTGGCACTGCCCGTCCTGCTGTGGGTGCTCGTATCAACTTGGGATCCTTTTACCTGGTGGGTACCCCTGTGGCTGTGGGCCTAGCATTTGGGCTTCGAGTTGGGTTTGTTGGGCTTTGGTTTGGGCTGCTCTCGGCCCAGATCGCTTGTGCTGTGTCGATGTTATATATGGTTTTGGTGAAGACTAATTGGGATGCTGAGGCTTTGAAGGCTAAGCAGCTCACTGGTTTGGAAATGACGGCCGCTAATGGTGCAGAAGGGGAAACCCAGGGGCTCCTTGGTGAGGAAAATAGCCATTAA 1527 48.98 MEVGNPDASSIKALSVSQVVEELKELWGLTFPVTTMNFLVFLRQVVSVLFLGRIGSLELAGGALAIGFTNITGYSIMVGLAAGLEPLCSQAYGSKNWDLLCLSLQRMILILLFATIPIGFLWINLDNIMVSLGQDHQITRMAAIYCIYSLPDLLTNTLLQPLKIFLRSQEDTKPLMYSTLVAVGLHVPLNYMMVVALGMGMQGVAMASVITNLNIVGLLSGYVWVWGRKGVMRWTLKVGEVCGGVGPVMKLAIPSCLGICLEWWWYEIVTVLSGYLSNPTSAVAATGILIQTTSMMYTVPLALSGCVSSRFVSQYPVWSTGCNVHNARQVGKELGSGKPRKAKAAAMVALGCALVVGGINVTWTVILRRTWATFFTDDMSVKSLVSSALPIIGLCELWNCPQTTGYGILRGTARPAVGARINLGSFYLVGTPVAVGLAFGLRVGFVGLWFGLLSAQIACAVSMLYMVLVKTNWDAEALKAKQLTGLEMTAANGAEGETQGLLGEENSH 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7342644 7347940 - CmoCh09G011620.1 Cmo09g01162 389164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01162 508 PANTHER PROTEIN DETOXIFICATION 12 491 - -
Cmo09g01162 508 Pfam MatE 254 311 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g01162 508 Pfam MatE 32 192 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g01162 508 Pfam MatE 330 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo09g01162 508 CDD MATE_eukaryotic 22 479 IPR045069 GO:0042910|GO:1990961
Cmo09g01162 508 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 491 - -
Cmo09g01162 508 TIGRFAM matE: MATE efflux family protein 32 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01162 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101219797 844.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01211 Cmo-Chr8:7683983 Cmo09g01162 Cmo-Chr9:7342644 1.69E-155 dispersed
Cmo09g01162 Cmo-Chr9:7342644 Cmo12g00181 Cmo-Chr12:1188721 1.78E-150 dispersed
Cmo01g00975 Cmo-Chr1:6261245 Cmo09g01162 Cmo-Chr9:7342644 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1288 Blo01g01755 . . . Bpe02g00187 . . Bma01g02538 . . . Cma09g01151 Car01g00842 . . Cpe06g00926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01162 . . . . . . Bhi09g01574 Tan01g3001 . . . . . Cla09g00968 Cam09g1019 Cec09g1023 Cco09g1034 . . Cre09g0985 . . . Cme01g00744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006122 0 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01162 Cmo_Chr09 FPKM 0.0 0.0 0.012882 0.0 0.0 0.0 0.012584 0.014483 0.0 0.00977