Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01181 ATGGCAGCCTCCATTTCAACATCACCTTATCCTCTCCTCACCTCAGAGCGCTCCAATCGCTTCGCCGTGAATGATTCATCTTCATCTAGATTGTTTTTCTCCTCGTCTCTACAGCTACCGGTTCAGCTTCGATGTGTTCGACTTGGAAACTGTGGGATTTCTGCTCCGTCGCGGTCTCGAATCTTCCCTGTGGTCAAAGCCAAGAACCAAACATTTTCTTCCTTTGATGATTTATTGGCCAACTCTGACAAGCCCGTGTTAGTGGACTTCTACGCAACCTGGTGTGGTCCTTGTCAGTTTATGGTTCCAATTCTTGAAAAAGTTAGTGATGCGCTGAGTGACACAGTCCAGGTGGTCAAGATTGACACTGAGAAATATCCTGTCATTGCTGATAAATACAAAATAGAGGCATTACCTACGTTTATCCTTTTCAAAGATGGAAAACCCCTTGACCGATTCGAAGGAGCTGTAGCTGCGGGTGAACTCATTCAACGCATTGAAAATTCCCTGAAGATTAAGCAATAA 525 44.76 MAASISTSPYPLLTSERSNRFAVNDSSSSRLFFSSSLQLPVQLRCVRLGNCGISAPSRSRIFPVVKAKNQTFSSFDDLLANSDKPVLVDFYATWCGPCQFMVPILEKVSDALSDTVQVVKIDTEKYPVIADKYKIEALPTFILFKDGKPLDRFEGAVAAGELIQRIENSLKIKQ 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8373415 8376361 - CmoCh09G011810.1 Cmo09g01181 389183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01181 174 PANTHER THIOREDOXIN Y1, CHLOROPLASTIC 14 170 - -
Cmo09g01181 174 CDD TRX_family 73 167 - -
Cmo09g01181 174 PRINTS Thioredoxin family signature 86 94 - -
Cmo09g01181 174 PRINTS Thioredoxin family signature 94 103 - -
Cmo09g01181 174 PRINTS Thioredoxin family signature 134 145 - -
Cmo09g01181 174 ProSiteProfiles Thioredoxin domain profile. 49 171 IPR013766 -
Cmo09g01181 174 Gene3D Glutaredoxin 68 174 - -
Cmo09g01181 174 Pfam Thioredoxin 70 167 IPR013766 -
Cmo09g01181 174 TIGRFAM thioredoxin: thioredoxin 72 168 IPR005746 GO:0015035
Cmo09g01181 174 ProSitePatterns Thioredoxin family active site. 87 105 IPR017937 -
Cmo09g01181 174 PANTHER GEO12009P1 14 170 - -
Cmo09g01181 174 SUPERFAMILY Thioredoxin-like 71 171 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01181 - - - mcha:111020017 284.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01181 Cmo-Chr9:8373415 Cmo16g00845 Cmo-Chr16:4457627 1.08E-20 dispersed
Cmo01g00946 Cmo-Chr1:5683231 Cmo09g01181 Cmo-Chr9:8373415 1.17E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01181 Cmo_Chr09 FPKM 74.34845 83.344643 68.785286 69.982231 105.503578 107.583527 105.777649 46.951199 42.33794 45.443726