Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01185 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTTATCAATGCTGATGAGGTTGCAAGAGTGACTTCTGTGAAGGAGTTGAGTGGGCAAATTTGCCAGATCTGTGGAGATGAGCTAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCGTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGTGTTGAAGGTGATGAAGAAGAAGACGATATCGATGATCTCGAGAATGAATTTGACATTGCTAACAAGGATCCTAATGGTGTATCTGATGCAATGCTCTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATACTAACGGTTCTGGAAATATGGCTTCTGACCTCAACACCTCGTCCGTCCCCACCGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATCATTCCTCCGTTTATTAGCCGTGGGAAAAAAGTCCATCCAGCACCATTCACTGATTCCATGTCTGGTTATGTTTATGTTTACTTTGTAGTGATTGATGTTGTAAGTGTTGATGTTGCAGCTAATCCAAGGCCGATGGATCCGAAAAAGGATTTAGCTGTGTACGGATATGGAACGGTTGCGTGGAAAGAAAGAATGGAGGAATGGCGGAAGAAACAAAATGAAAGGCTTCAAGTAATTAAACACGAGGGTGGAGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCGATCTCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTCTCCTTCATCCTGTCAACGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCGATTGTCCGAGAAACCTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATATATGTCAGTACTGTGGATCCATTGAAGGAGCCTCCTCTCATCACGGCAAACACCGTCCTGTCTATTCTTGCCGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCGGACGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCCGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATCGAACCTCGGGCCCCAGAATGGTATTTTGCCCTGAAGGTCGACTATTTGAAAGATAAAGTTGATCCAGCCTTCATCAGGGAACGACGGGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTCGTTGCCATGGCTCAAAAAGTTCCTGAAGACGGGTGGACAATGCAGGACGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTTCAAATGGGGTTCGTGATTTGGAGGGAAATGAATTACCTCGTTTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTCGATCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTATCGGCAATCATTTCAAACGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCGCTTAGAGAAGCAATGTGCTTCATGATGGACCCGATTTCGGGAAAAAGAATATGCTATGTACAGTTTCCACAAAGATTTGACGGGATTGATAGGCACGATCGATACTCGAATCGCAATGTTGTGTTTTTTGATATCAACATGAAAGGATTGGACGGTATTCAAGGACCGATTTACGTCGGAACGGGATGTGTCTTCAGGAGGCAGGCTCTTTATGGATATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAATTGTCTTCCAAAATGGTGCTGCTGCTGCTGTGGAACTAGAACGAAGACTAAACCGAAGACCAGTGATAAAAAGAAGTTAAAAACCAAAGATACGTCGAAACAGATTCACGCGCTCGAAAATATCGAGGAAGGAATCGAAGGAATAGATAATGAGAAATCGTCTCTGATGCCCCAAGTTAAGTTCGAGAAGAAGTTCGGGCAATCGCCAGCCTTCATTGCTTCGACACTTATGGAAGACGGTGGCGTGCCCGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCATGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTCGGGTGGATATATGGGTCCGTTACAGAGGATATTTTAACAGGTTTTAAGATGCATTGCCATGGATGGAGATCAGTTTACTGCATTCCTAAAAGGCCAGCGTTCAAGGGTTCGGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGATGGGCTCTCGGGTCTGTTGAAATTCTTTTGAGTAGGCACTGTCCAATATGGTATGGCTATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCTGTTGTTTATCCATTGACATCGGTTCCACTGATTGCGTATTGTACGCTACCAGCTGTCTGCCTGCTTACAGGGCAGTTCATTGTCCCCGAGGTAACAACAATACCGACTTCTGAATGCGTACGGTTTTTCTTTCATCGGCTAAGCAATTATGCCAGTATCATCTTCATGGCCCTTTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGCGTCGGGATCCACGATTGGTGGAGAAACGAGCAATTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACGGTCACATCGAAAGGAGGAGACGATGGCGAGTTCGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTATTAGTCCCTCCATTGACGTTACTGATCATAAACATTATCGGAGTTGTCGTCGGAATTTCAGACGCTATCAACAACGGTTACGACTCATGGGGACCACTCATCGGTAAGCTATTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTATGGTCAATTCTTCTCTCGTCGATTCTATCGCTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTCTTGGAAGTTTGCGGGTTAAACTGTGACTAA 3369 45.47 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNGVSDAMLYPHLAVGRGSHTNGSGNMASDLNTSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSGYVYVYFVVIDVVSVDVAANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRLLHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKDKVDPAFIRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGSNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRTKTKPKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPEVTTIPTSECVRFFFHRLSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCD 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8679508 8686164 + CmoCh09G011850.1 Cmo09g01185 389187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01185 1122 Pfam Cellulose synthase 380 1110 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo09g01185 1122 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cmo09g01185 1122 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cmo09g01185 1122 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cmo09g01185 1122 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 529 672 IPR029044 -
Cmo09g01185 1122 PANTHER CELLULOSE SYNTHASE 1 1121 - -
Cmo09g01185 1122 SUPERFAMILY RING/U-box 28 107 - -
Cmo09g01185 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cmo09g01185 1122 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1121 - -
Cmo09g01185 1122 SUPERFAMILY Nucleotide-diphospho-sugar transferases 394 884 IPR029044 -
Cmo09g01185 1122 Coils Coil 99 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01063 Cmo-Chr3:7914116 Cmo09g01185 Cmo-Chr9:8679508 0 dispersed
Cmo07g00802 Cmo-Chr7:3683908 Cmo09g01185 Cmo-Chr9:8679508 0 dispersed
Cmo09g01185 Cmo-Chr9:8679508 Cmo01g01553 Cmo-Chr1:11951151 0 dispersed
Cmo01g00943 Cmo-Chr1:5607120 Cmo09g01185 Cmo-Chr9:8679508 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01185 K10999 - csv:101214061 2085.46