Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01192 ATGACAAGCAAAGGGGCGTCCCTGAAGAGACGCCCATCCGGCCATATGCGGGCCAACGTAGAAGAATGCCATGATGCGATCGAGGAGGACGATGCATCATCCAACACACCACCACGCAAAGTGGGCATTGAAGACATGTTGAGACACAAGCATAACAGAGACATCAGCATAGACATGAAGGACAAGATAGGCTTGTTGAAGGGCCGGGTAGGGCCCCGGGCCTTAACCTCAAAAGTTGAGGTTTCGGAAGGAATTTGGTCATGCGGTTCGGGAGTTAATGTGGGCGAGCGTGCCGAGACGAGTGTCTTGGGGCGACTTCCTTTGAAATGGGTTTTTGAAGGACAGTACCGGACGGCACGGGTGTGCCGGTATTGCGCCCTAGCCCGCGTGTTGGAGGTTGCTACATACACCCACTATCCGCTTCTTCCTTCTCCACGTCTTGCATCCATTCTGCCCATGGCTTCTTTAGCTGCCTCCTCCGCCGCCGCCTCCCTCGGCGTTTCCGAAATGCTCGTAAACCCTTTAAGCTTCTCCACTGCCTCTGCTAGATCCGCTCCCTCTCCTAGTCCGACCACCTTCAAGCCTGTTGCAATTTTCAGGAAGAAGCCCGCCCCCAAGTCAAAGCCCTCCGCCGTCTCTCCGATCAATGACGAGCTCGCCAAGTGGTACGGTCCCGACCGAAGGATTTTCTTGCCAGATGGGCTGTTGGATCGATCCGAGATCCCGGAGTACTTGAACGGAGAAGTCCCCGGCGACTACGGTTACGACCCGTTAGGACTCAGCAAGAATCCAGAAAACTTCACCAAATATCAAGCCTTTGAGTTGATACATGCACGATGGGCGATGCTTGGGGCTGCTGGTTTCATCATTCCTGAGGCTTTCAACAAATTTGGCGCCAACTGTGGCCCGGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAATAGCATTCCGATCAACCTCGTTGCCGCGGTCGTTGCTGAGGTCGTTCTTGTTGGTGGCGCTGAATATTACCGAATCATCAATGGCTTGAACTTTGAGGACAAACTTCACCTGGGAGGGCCGTTCGACCCGTTGGGGCTAGCGGACGACCCAGACCAAGCCGCGATCTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCATTGTTTGCAATGCTAGGGTTTTACTTTCAAGCATACGTGACTGGAGAAGGGCCAGTGGAGAACTTGGCTAAGCATTTGAGTGATCCTTTTGGAAATAACTTGCTCACAGTCATTTCAGGGAAGGCTGAAAGAGTTCCAACCCTTTAA 1323 52.68 MTSKGASLKRRPSGHMRANVEECHDAIEEDDASSNTPPRKVGIEDMLRHKHNRDISIDMKDKIGLLKGRVGPRALTSKVEVSEGIWSCGSGVNVGERAETSVLGRLPLKWVFEGQYRTARVCRYCALARVLEVATYTHYPLLPSPRLASILPMASLAASSAAASLGVSEMLVNPLSFSTASARSAPSPSPTTFKPVAIFRKKPAPKSKPSAVSPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPLGLSKNPENFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVAAVVAEVVLVGGAEYYRIINGLNFEDKLHLGGPFDPLGLADDPDQAAILKVKEIKNGRLALFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGKAERVPTL 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8748631 8752870 + CmoCh09G011920.1 Cmo09g01192 389194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01192 440 Gene3D Chlorophyll a/b binding protein domain 229 440 - -
Cmo09g01192 440 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 153 440 IPR001344 GO:0009765|GO:0016020
Cmo09g01192 440 Pfam Chlorophyll A-B binding protein 242 403 IPR022796 -
Cmo09g01192 440 SUPERFAMILY Chlorophyll a-b binding protein 222 430 - -
Cmo09g01192 440 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 153 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01192 Cmo-Chr9:8748631 Cmo12g00691 Cmo-Chr12:5112793 9.48E-77 dispersed
Cmo12g00934 Cmo-Chr12:8674889 Cmo09g01192 Cmo-Chr9:8748631 4.46E-11 transposed
Cmo01g00935 Cmo-Chr1:5416812 Cmo09g01192 Cmo-Chr9:8748631 3.47E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01192 K08916 - csv:101218137 494.582