Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01205 ATGTCTACTATTAGTGGGCTTAGACCATTACAAATGGTATCAGAGATAGATACCAAGCGATGTGTCAGCGAGGAGGTTGAGTTCCGAAGAGGGTGGACACGAGATCAAACAACTTTTGTTTTGAAAATCAAAGAATTTTTGTTTCGAAGATCGAAGAATTTGGTGTTGAAGATCATGACTCCATCTAACATGGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTGGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCCAATTGCAATCTTGCTTCTCTCGGTGTTCAGAGATCTAAACCCTCCACGCCTAAGCACGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCGTACTCGCCCGACTACGCTTACCCTACGAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCCGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCACCCACTTTGCCATCAGGTTCGTCTCTCCGCTCTCGTCTCATTCGATTATGTTTTTCGCTATTCCACAGGCGTGACGATGGCTCTTCCTACACCAATCCCACATCGCTAAACGTCCTCAAATTTCCTCCGAAACGAAAAATCGCAAGCCCTAACCATGGTTCCATCTCTTTCTCTCTTCACTCTTTTGCCCAATGGTCAGCCCTCCGTCGGGGTTGA 1197 49.87 MSTISGLRPLQMVSEIDTKRCVSEEVEFRRGWTRDQTTFVLKIKEFLFRRSKNLVLKIMTPSNMASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGYSSYSPDYAYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSLRSRLIRLCFSLFHRRDDGSSYTNPTSLNVLKFPPKRKIASPNHGSISFSLHSFAQWSALRRG 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9125440 9132653 - CmoCh09G012050.1 Cmo09g01205 389207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01205 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 131 IPR000504 GO:0003723
Cmo09g01205 398 Gene3D - 57 167 IPR012677 -
Cmo09g01205 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 158 IPR000504 GO:0003723
Cmo09g01205 398 SUPERFAMILY RNA-binding domain, RBD 73 161 IPR035979 GO:0003676
Cmo09g01205 398 SMART rrm1_1 75 147 IPR000504 GO:0003723
Cmo09g01205 398 CDD RRM_RBM24_RBM38_like 74 149 - -
Cmo09g01205 398 PANTHER BOULE-RELATED 59 330 IPR037366 GO:0003729
Cmo09g01205 398 PANTHER OS01G0876800 PROTEIN 59 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01205 - - - csv:101221767 443.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01313 Cmo-Chr4:6691049 Cmo09g01205 Cmo-Chr9:9125440 8.05E-46 dispersed
Cmo05g00978 Cmo-Chr5:7887989 Cmo09g01205 Cmo-Chr9:9125440 3.10E-50 dispersed
Cmo08g00157 Cmo-Chr8:917224 Cmo09g01205 Cmo-Chr9:9125440 6.66E-56 dispersed
Cmo09g01205 Cmo-Chr9:9125440 Cmo12g00631 Cmo-Chr12:3949107 1.93E-53 dispersed
Cmo01g00927 Cmo-Chr1:5331589 Cmo09g01205 Cmo-Chr9:9125440 2.41E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01205 Cmo_Chr09 FPKM 5.23743 5.652623 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0