Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01208 ATGGGTTATGATCATTTGGATCAATCTTCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTCTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTTCAATGAAACATTCTTTGTTACTGATACCCTATGTTCAGTCTGTTTAGGGGAATACCAAACAAAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCATATACAGATTGAGATGGGACTCGAATCGACAAATGAACAACGTCGCGAAGAAGCACCTCCTCAACATAATAATCAAGCTTGTCATCATACAACACCTCCTGTGTGA 546 41.39 MGYDHLDQSSELKLYQFFVFSVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVGLKKEFREMLPIIVFNETFFVTDTLCSVCLGEYQTKDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRREEAPPQHNNQACHHTTPPV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9214988 9218174 - CmoCh09G012080.1 Cmo09g01208 389210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01208 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 140 IPR013083 -
Cmo09g01208 181 SMART ring_2 93 134 IPR001841 -
Cmo09g01208 181 MobiDBLite consensus disorder prediction 157 181 - -
Cmo09g01208 181 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Cmo09g01208 181 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 175 - -
Cmo09g01208 181 Pfam Ring finger domain 93 135 IPR001841 -
Cmo09g01208 181 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 11 175 - -
Cmo09g01208 181 SUPERFAMILY RING/U-box 77 146 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00922 Cmo09g01208 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00928 Cmo-Chr2:5700632 Cmo09g01208 Cmo-Chr9:9214988 9.04E-27 dispersed
Cmo09g01208 Cmo-Chr9:9214988 Cmo15g01360 Cmo-Chr15:9301295 9.30E-34 dispersed
Cmo01g00922 Cmo-Chr1:5226050 Cmo09g01208 Cmo-Chr9:9214988 4.63E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01208 K19039 - csv:101219324 264.618