Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01213 ATGGGCTGCGCGCAAGCGAAGCATTCGATGAATTCACCCAATGGGCGAATTCAGACCCTGAAATTGGAAAATGGGTATGTTGGGACTGGGGATTTTAAGGCTCATCGGAGGCCAGCGGCGCAGAGGAGATTTGTGAACAGGGAGGTGTCTGAAGCAGTGAACCCCCACGGTGGTGATGGCGGCGGCGGCAATGGCGGATTAGGTTTGGAGAAGAGTGAGGTGGTGGTGGATGGATGGCCCAAATGGCTTACTAGCAATATTCCTAAGCATGTGTTGGCTGGCTTGGTTCCCAAGAGTGTGGAGGCCTATGACAAGCTTGATAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACAACAGAGCCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATATTACTGAAATTGGATCACCCCAACATTGTCAAACTTGAAGGATTAGCCACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTCGAGTTTATGCAGACTGATTTGGCCCGGGTTATTTCTCGCCCCGGAGTATGGCTTACGGAGCCTCAGGTCAAATGTTATATGCATCAGCTACTCTCTGGTCTGAAGCATTGCCACGATAAGGGGATACTACACCGTGATATCAAAGGATCGAACCTGTTAATCGACAAAAACGGGATGCTGAAGATTGGTGACTTTGGGCTTGCTAATTTTTTCGGTCCAAAGAGACATCTTACAAACCGTGTTGTGACACTTTGGTATCGAGCTCCGGAGCTATTGTTAGGTTCTATAGATTATGGAGTCGGCATTGATCTATGGAGTGCTGGATGCCTCTTGGCCGAAATGTTCACGGGAAGGCCGATTCTGCCCGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGGTATGTGGAACACCATCTGAGGAATATTGGAGAAAACTCAAGCTATCACCGAGTTTCAAGCCTCCGCAGTCGTATCGACCTAGTCTCCGAGAATCGTTTAAGCATCTGCCGTCCTCGTCTTTAGGCCTCTTAAGCACTCTACTTGCTTTGGAGCCTTCATATCGCGGTTCTGCATCGTTAGCTCTCGAGAATGAATTCTTTTACACAAGCCCATTGGCATGCGACGTTTCGGGTCTTCCTGTTATCCATAGTGAGCCCGATGAACCGAATCAAACGAATCAGCCGAAGTGCAAGAATTCTAAAGTGACAAGGCGTTCTTCTACACACCAAGGGCGTCGGAGGAAAGATTTAGCTGCTGAAAAACCAAAAGAAGAGTCGAACATTCGCAAACAGCTTTCACAGCAAATGGTCGATGCTGACGAACAAAGCGAAGATCGAGGGAGTACTACAACGAGCACCTCCTCGAGTGCTAACATGGGAGGAGGGCAAAAGGGGAGTACTACGACGAGCACCTCCTCAAGCGTTAACAGGGGAGGATCAGGAAAGGGGAGCTCTAACTTCTTGCCATCTCCAACCACATCTAATAAGAAACCGTCACGAACCGAAGGCCATCTTGAGGCTACCAACAACCTCAATTTGCCCCCATTACCAAAGTCGAGAAGATACTCAACCTTTAACATTGAAGACCGTGATACGCATATCTCTGGTCGGATTCGGAGGTCGGTCTCAACCAGAGATTTCAGGAATTTGGCGCGAAAAGAGCATTTGAAATTATATGCTGTTGATGATTAG 1740 47.47 MGCAQAKHSMNSPNGRIQTLKLENGYVGTGDFKAHRRPAAQRRFVNREVSEAVNPHGGDGGGGNGGLGLEKSEVVVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTTEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFEFMQTDLARVISRPGVWLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGMLKIGDFGLANFFGPKRHLTNRVVTLWYRAPELLLGSIDYGVGIDLWSAGCLLAEMFTGRPILPGRTEVEQLHKIFKVCGTPSEEYWRKLKLSPSFKPPQSYRPSLRESFKHLPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACDVSGLPVIHSEPDEPNQTNQPKCKNSKVTRRSSTHQGRRRKDLAAEKPKEESNIRKQLSQQMVDADEQSEDRGSTTTSTSSSANMGGGQKGSTTTSTSSSVNRGGSGKGSSNFLPSPTTSNKKPSRTEGHLEATNNLNLPPLPKSRRYSTFNIEDRDTHISGRIRRSVSTRDFRNLARKEHLKLYAVDD 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9362476 9367622 - CmoCh09G012130.1 Cmo09g01213 389215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01213 579 MobiDBLite consensus disorder prediction 399 537 - -
Cmo09g01213 579 MobiDBLite consensus disorder prediction 402 417 - -
Cmo09g01213 579 Pfam Protein kinase domain 103 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01213 579 ProSiteProfiles Protein kinase domain profile. 103 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01213 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Cmo09g01213 579 MobiDBLite consensus disorder prediction 428 444 - -
Cmo09g01213 579 SUPERFAMILY Protein kinase-like (PK-like) 98 387 IPR011009 -
Cmo09g01213 579 PANTHER CYCLIN-DEPENDENT KINASE 58 504 - -
Cmo09g01213 579 PANTHER CELL DIVISION PROTEIN KINASE 58 504 - -
Cmo09g01213 579 Gene3D Phosphorylase Kinase; domain 1 96 190 - -
Cmo09g01213 579 MobiDBLite consensus disorder prediction 462 535 - -
Cmo09g01213 579 Gene3D Transferase(Phosphotransferase) domain 1 191 424 - -
Cmo09g01213 579 SMART serkin_6 103 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01213 579 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01213 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 877.856
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00794 Cmo-Chr7:3633060 Cmo09g01213 Cmo-Chr9:9362476 1.02E-170 dispersed
Cmo09g01213 Cmo-Chr9:9362476 Cmo16g00430 Cmo-Chr16:2044031 1.02E-147 dispersed
Cmo09g01213 Cmo-Chr9:9362476 Cmo18g00235 Cmo-Chr18:1536998 1.92E-150 transposed
Cmo09g01213 Cmo-Chr9:9362476 Cmo09g01297 Cmo-Chr9:11502373 7.49E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74586 PF00069 Pkinase 3.70E-68 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01213 Cmo_Chr09 FPKM 10.294637 12.243704 11.473016 10.862029 11.945347 10.441479 11.838928 10.533487 10.596212 9.61584