Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01216 ATGTCCATGCTCGCCTCCTTCTTCTACAAGGGCTTCAAGGGTGCCCAATGTAAAACGCTGCTTAAATTGACAATTCCACGGATAAAGCTGCTGAGGAATCGGAGGGAGATTCAGCTTAAGCAGATGCGCCGAGACATAGCTAAGCTTCTTGAGACAGGTCAAGAAGCGACTGCTCGCATTCGGGTAGAGCATATAATCAGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAATTGTTTTGTGAGCTTATTGTTGTTCGCCTTCCAATTATTGAAACACAAAGGGAATGTCCTCTAGACTTGAAAGAAGCAATCTCGAGTGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTCTCCAGGTTCAGTTGCTTTTTGCTGTTAAATATGGGAAGGAATTTGTATCAGCTGCAACAGAGCTTATGCCTAACTGTGGCGTTAATCGTCAGCTGGTAGAGCTGCTTTCTGTTCGTGCTCCTTCACCCGAGAAGAAACTGAAGCTCTTAAAGGAAATCGCCGAAGAACACGACGTAGATTGGGATCCTGCTGGAACTGAAGCCGAGTTTAACAAATCACCAGAAGATTTGCTTAATGGATCGGCACAGTTCGTCAGCGCATCAAAATTACCCCTTCCTCAAGAGAAACACAACGAAGCATACAATGCACCACAACCTGATTCTGATTCTGAATTGGACATGTTAGACTTCCCTGAAGTTCCAAAGATATCAGTTTCTCCACATTCTACTATAGATCCTGGTTCTGCTTCATCTATGATCCCTCCTCCGTCAACATCGCCACCGCCTGAAACTACTCATGATTCATCGAAGTATTCTTGTATTCCTGAAACCCCACCAGAAGACTTACAATTGAGACGTGGGGAGGTGACACCGGTACGATCTGTTTCACCCAGCAAGGATCAAATGAATATTTCGGTTGGGGAAGATAAACAGTTTTTGCCTTTTATAGCTCCCCCATCAAGGACCCCTGAGGAGAAGTTTAGTTTCAAACCACAGTTCGAACCCGAGATAAATTCACCACCACCCTCGGTTTCAAGGACACCTGATGAGAAATTTGGTTTGAAGTATGAACAGGAGATAATTTCACCCCCACCCTCTGCTTCAAGGACAAAGAGTGATGTCAGTTTGGATTTGCAGGACGTGTTGGCAGCTGCTCAGGCTGCTGTTGAAACCGCCGAGCGTGCTGCTGCTGCAGCTCGCTCCGCAGCTAGTTTAACAAAGGGCCCTGAAATTTGTTGCGAGAATCCGTTCCATGGAGCTACTACAAGTCCACCAGATCATGAACAAACATTCCACCTAAACCAACAAGATTCTATAGGGCATCATCATTCTAGCTCTATGCCATATTATTCACAAGATTCTTTCCAAGAACATCACAAAGAAAGCCCTGGTTCAGATGTTTCCGACCACCACCGGTTCGAGTCGCAGAAATCGGGTTTCGACTCCTCTCCCGGTGATTCACCATCCGAACACATAACAATCCCCCATCAGCCCCAGAGGCTTCCATCGATGGACGACGACCCATACTTTTCGTACCCAAATTTATTTACATCACAGAAACCAAATCCAGGATTTGATCATTCATCAGCTGATGGTTCTTGA 1629 45.61 MSMLASFFYKGFKGAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQLLFAVKYGKEFVSAATELMPNCGVNRQLVELLSVRAPSPEKKLKLLKEIAEEHDVDWDPAGTEAEFNKSPEDLLNGSAQFVSASKLPLPQEKHNEAYNAPQPDSDSELDMLDFPEVPKISVSPHSTIDPGSASSMIPPPSTSPPPETTHDSSKYSCIPETPPEDLQLRRGEVTPVRSVSPSKDQMNISVGEDKQFLPFIAPPSRTPEEKFSFKPQFEPEINSPPPSVSRTPDEKFGLKYEQEIISPPPSASRTKSDVSLDLQDVLAAAQAAVETAERAAAAARSAASLTKGPEICCENPFHGATTSPPDHEQTFHLNQQDSIGHHHSSSMPYYSQDSFQEHHKESPGSDVSDHHRFESQKSGFDSSPGDSPSEHITIPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGFDHSSADGS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9403453 9408992 + CmoCh09G012160.1 Cmo09g01216 389218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01216 542 Gene3D - 5 192 IPR042277 -
Cmo09g01216 542 PANTHER IST1 FAMILY MEMBER 1 531 IPR005061 GO:0015031
Cmo09g01216 542 Coils Coil 391 411 - -
Cmo09g01216 542 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 531 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 463 486 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 487 505 - -
Cmo09g01216 542 Coils Coil 32 59 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 402 542 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 214 358 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 431 462 - -
Cmo09g01216 542 MobiDBLite consensus disorder prediction 521 542 - -
Cmo09g01216 542 Pfam Regulator of Vps4 activity in the MVB pathway 18 182 IPR005061 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01216 - - - csv:101208940 777.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00111 Cmo-Chr2:586731 Cmo09g01216 Cmo-Chr9:9403453 3.17E-41 dispersed
Cmo04g02140 Cmo-Chr4:14635299 Cmo09g01216 Cmo-Chr9:9403453 8.31E-77 dispersed
Cmo07g00390 Cmo-Chr7:1785036 Cmo09g01216 Cmo-Chr9:9403453 3.82E-64 dispersed
Cmo09g01216 Cmo-Chr9:9403453 Cmo11g00685 Cmo-Chr11:3284157 2.73E-74 dispersed
Cmo09g01216 Cmo-Chr9:9403453 Cmo03g00665 Cmo-Chr3:5953825 3.65E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01216 Cmo_Chr09 FPKM 0.949841 1.665826 15.013121 16.876062 54.381714 54.526394 54.829369 12.771585 12.196744 12.284768