Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01218 ATGGAGCACTACAAGGTTTTGGCTCTGGGTTTTGTCTCTTTGATCTTGCTGCTTCCTTCACTATGGCTTGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCTTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTCAATCCTTGTACATGGTTTCATGTTACTTGCAACAATGATAATAGTGTCATACGAGTTGATCTTGGAAACGCAGCTTTATCGGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAACAACATAAGTGGAGTAATCCCAAGTGATCTGGGAAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCAATTCCCGACACGTTAGGCAAGCTGTCAAAACTACGATTCCTCCGGCTGAACAACAACAGCTTATCAGGTCCTATTCCTATGTCATTGACGAATATCTCATCCCTTCAAGTGTTGGATCTATCGAATAACCATCTCTCGGGCGTGGTTCCAGATAACGGTTCCTTCTCCTTGTTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGACGTCCTTGCCCTGGATCGCCACCGTTTTCTCCTCCTCCACCCTTTGTCCCGCCACCTCCTATATCTTCACCAGGCGGGAACAGTGCAACCGGAGCGATCGCTGGTGGCGTTGCTGCAGGCGCTGCGTTACTTTTTGCAGCTCCAGCAATTGCATTTGCGTGGTGGCGTCGTAGAAAACCCCAAGAAGTTTTCTTCGACGTTCCTGCCGAAGAGGATCCGGAAGTGCATCTGGGACAGCTCAAAAGATTTTCACTGAGAGAGCTACAAGTAGCTACTGATAGTTTTAGTAACAAGAACATACTTGGTCGGGGTGGATTTGGTAAGGTCTACAAAGGTCGATTGGCAGACGGTTCTTTAGTCGCCGTAAAAAGACTCAAGGAAGAACGTACGCCTGGTGGAGAGTTGCAGTTTCAAACAGAAGTCGAGATGATCAGCATGGCTGTACATCGGAACCTGCTACGACTACGTGGATTTTGCATGACGCCAACCGAACGACTTCTTGTTTATCCGTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATAGCATTGGGATCAGCAAGAGGGTTGTCTTATTTACACGATCACTGTGATCCAAAGATCATTCACCGTGACGTAAAAGCTGCAAATATTTTGCTAGATGAGGAGTTCGAAGCTGTCGTAGGTGACTTCGGGCTGGCCAAACTCATGGATTACAAAGATACTCATGTCACCACCGCCGTACGTGGTACAATTGGACATATAGCTCCTGAGTATCTATCCACTGGTAAGTCCTCTGAGAAAACAGACGTTTTCGGGTACGGTATCATGCTTCTAGAGCTTATAACTGGTCAAAGAGCTTTCGATTTGGCTCGACTCGCCAATGACGATGATGTCATGCTACTCGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGACCTTCAGAATAACTATGTCGAATCCGAGGTCGAACAGTTGATTCAAGTAGCGCTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCGGAGGTGGTTCGAATGCTGGAAGGAGACGGGTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATTCTTCGACAAGAAATCGACCTATCGCCCCATCCGAATTCGGATTGGATTGTGGATTCGACTGAAAATCTACATGCAGTCGAGCTTTCTGGTCCGAGATGA 1878 47.12 MEHYKVLALGFVSLILLLPSLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9420581 9427062 - CmoCh09G012180.1 Cmo09g01218 389220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01218 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01218 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cmo09g01218 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 625 - -
Cmo09g01218 625 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01218 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Cmo09g01218 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Cmo09g01218 625 Pfam Protein kinase domain 303 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo09g01218 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cmo09g01218 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cmo09g01218 625 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cmo09g01218 625 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515
Cmo09g01218 625 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 12 625 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cmo09g01218 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cmo09g01218 625 SUPERFAMILY L domain-like 30 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00411 Cmo-Chr4:2031640 Cmo09g01218 Cmo-Chr9:9420581 0 dispersed
Cmo04g00848 Cmo-Chr4:4233955 Cmo09g01218 Cmo-Chr9:9420581 0 dispersed
Cmo09g01218 Cmo-Chr9:9420581 Cmo16g00281 Cmo-Chr16:1265397 0 dispersed
Cmo09g01220 Cmo-Chr9:9666017 Cmo09g01218 Cmo-Chr9:9420581 7.38E-155 dispersed
Cmo09g01218 Cmo-Chr9:9420581 Cmo09g01219 Cmo-Chr9:9592920 7.38E-155 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74587 PF00069 Pkinase 9.50E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01218 K13418 - csv:101208695 1120.15