Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01238 ATGGCCGCTCTTCACCAAACCGCCGCCTCACTCCAGGCCAAACTCCTTCCAACAATCCGAATCTCCCGGACTACTCCGGCAAACCTCTCTTTCTCCGCCACTTTTCTTTCTGGAAGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCTAGAATGTCCGCCTCGGCTGCTGGAAGCTACGCTGCGGCGTTGGCCGAAGTCGCTGCGTCTAACAACACGCTGGATGCAACAAGCGGCGATGTCGAGAAGATCGAGAGCGTTTTCGCGGATTCGCAGGTGTTCGATTGCTTCGCGAATCCGACGATTAGCATCGAGAAGAAACTTGCGTTGGTGGATGAGATCGCGGCGTCGTCGTCTCTACTGCCGCATACGGCGAATTTCTTGAAGATCCTAGTGGACGCAAAGAGAATCGATATCGTGAAGGAGATCGTGACGGAGTTCGAATCGGTTTACAACAAAATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCCGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGTGGAGCTAAGAATGTGAGGATCAAGACGCAGATTGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGAAATTCTGGATCGAAACTCATTGATTTAAGCGTCAAGAAACAGCTTGAGGAAATTGCTTCTCAGCTTGATCTTGGTAATATTCAACTGGCTGTATAA 723 52.28 MAALHQTAASLQAKLLPTIRISRTTPANLSFSATFLSGRLRLGQHRSHGGARMSASAAGSYAAALAEVAASNNTLDATSGDVEKIESVFADSQVFDCFANPTISIEKKLALVDEIAASSSLLPHTANFLKILVDAKRIDIVKEIVTEFESVYNKITNTELAVVSSVVPLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIASQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10615482 10616204 - CmoCh09G012380.1 Cmo09g01238 389240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01238 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cmo09g01238 240 Gene3D - 57 149 IPR026015 -
Cmo09g01238 240 PANTHER ATP SYNTHASE DELTA CHAIN 27 239 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 PANTHER BNACNNG66500D PROTEIN 27 239 - -
Cmo09g01238 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cmo09g01238 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 55 157 IPR026015 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00954 Cmo09g01238 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00234 Cmo-Chr1:1052110 Cmo09g01238 Cmo-Chr9:10615482 9.22E-10 dispersed
Cmo01g00954 Cmo-Chr1:5912764 Cmo09g01238 Cmo-Chr9:10615482 7.32E-136 dispersed
Cmo06g01025 Cmo-Chr6:8019137 Cmo09g01238 Cmo-Chr9:10615482 1.41E-17 dispersed
Cmo09g01238 Cmo-Chr9:10615482 Cmo17g00927 Cmo-Chr17:8264452 2.53E-12 dispersed
Cmo09g01238 Cmo-Chr9:10615482 Cmo14g01022 Cmo-Chr14:5566786 2.86E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01238 K02113 - csv:101211740 375.17