Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01249 ATGGACGCGATCGAGGAGTTGGGTGAGTTGGCTGAATCGATGCGCCAAGCGGCGGCTTTGCTTGCCGATGAAGATGTTGATGAGAATTCTGCTTCTGGTGGTTCTTCTCGTAGGGCTGTGACTTTCCTCAACGTTGTGGCTTTGGGCAATGTTGGTGCTGGCAAATCTGCAGTTCTGAATAGTTTAATTGGGCATCCTGTTTTGCCAACCGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGATCTGCAGAGGGATAGTTCTTTGAGTAGCAAATCAATCATTCTGCAAATTGATAATAAATCTCAACAGGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGGTTGAGCAAGGGTTCTTCAGGAAAGAGCCGAGATGAAATATATCTAAAGCTTCGCACAAGTACAGCACCTCCACTCAAGTTGGTTGATTTACCTGGGCTTGATCAACGGGCCATGGATGATTCTGTGGTTAGTGAATATGCCGAACACAATAATGCAATTTTGCTAGTTATTGTACCAGCAGCTCAAGCTCCTGAAATTGCTTCATCTAGAGCCCTAAGAGCTGCCAAGGAATTTGATGCAGAAGGTACCAGAACCATTGGTGTAATTAGCAAAATTGACCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAGGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCATCTGATATCCCGTGGGTTGCTTTAATCGGTCAGTCGGTTTCAATAGCTACTACCCAGTCTGGATCTGTTGGCTCTGAGAATTCCTTGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTAGGCAGGCTAGCTTTAGTTGATGCATTGTCCCAACAAATCCGGAAGCAAATGAAAGTCCGGCTTCCTAATCTTCTTTCTGGGTTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTAGTTAGGCTTGGTGAGCAAATGGTGAACGGCGTTGAGGGGACTAGAGCTCTAGCTTTGGAACTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGGGTGCAGGTTGGAAAATTGTTGCTAGCTTCGAGGGAAATTTTCCAAATCGAATCAAGCAATTACCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATCGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCTGAGAAGGGTTTGAGATCGTTAATAAAAGGTGTTTTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGACGAGGTGCACAGGGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGAGAGGTTGTGGCCATTGCAAGTGCTGCCCTGGATGGGTTTAAAAATGAAGCGAAAAAGATGGTTGTGGCGTTAGTTGACATGGAGCGAGCATTTGTTCCACCGCAGCATTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAGACTAGATCATCAAAAAAAGGACAAGAGGCTGAACAAGTGATGTCAAAGAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAATCTGGTGGAAGCTTGAAATCAATGAAAGAAAAACCTAGTACGGAAGAGAAGGAAGCGCAGGAAAGTACGGGTTTGAAGACAGCAGGTGCTGAAGGAGAGATAACAGCTGGTTTCTTGTTAAAGAGAAGTGCAAAAACTAATGGTTGGAGCAGGCGATGGTTTGTTTTGAATGAGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGAGACTTTCGTGGTGTCATTCCTTTAGAGGATTGTAATATAGAAGAAGTTACAGATGAGGAACAGCCTCCACCTTCAAAGAGTTCAAAGGATAAGAAGGCAAATGGGCCAGATTCTGGAAAGGGACCAAGTCTTGCGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTAAAAGCCCATAGTGCTGTTGTTTTGAAAGCCGAGAGCGTCGCCGACAAGGTGGAATGGACAAACAAGATACGCCGTGTCATTCAACCGTCCCGAGGAGGGCAAACGAAAGGTGCATCCTCTGGAGGTGGTCTTACCTTGCGGCAAAGTCTATCTGATGGCTCTCTAGACACAATGACTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAAGTTCGTGGTTACGTTGAAGCAGTTTTAAATAGTTTGGCTGCAAATGTCCCCAAGGCTGTTGTACTTTGTCAAGTTGAGAAGGCCAAGGAAGACATGCTAAACCAATTATATAGCTCGATCAGTGGCCAAAGCTCAGCCAGGATTGAGGAGCTTCTTCTGGAGGACCCGAACGTAAAACGGAGGAGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCGAAACTTACGCGCCAGCTCAGCATCCACGATAATAGTGCAGCTGCTGCTGGTTGGTCCGACAATGATGCAGCAGAAAGTAGTCCCCGAACTAGCGGAACGCCTGGAGATGACTGGAGATCTGCATTTGATGCAGCTGCTAATGGCCGGGTCGACTCCAGAAGATCTTCTTCCAACGGCCGCAGTAGGTATTCTAACGATCCCGCACAAAACGGTGACATAAACTCAGGTTCGAACTCGAGCAGTCGTCGTACTCCAAACCGTCTGCCACCAGCACCTCCACAGTCATCTTCTGGTTCGAAATACTTCTAG 2781 45.74 MDAIEELGELAESMRQAAALLADEDVDENSASGGSSRRAVTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDSSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDDSVVSEYAEHNNAILLVIVPAAQAPEIASSRALRAAKEFDAEGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATTQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKQMKVRLPNLLSGLQGKSQIVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGQEAEQVMSKRASSPQTNSQQSGGSLKSMKEKPSTEEKEAQESTGLKTAGAEGEITAGFLLKRSAKTNGWSRRWFVLNEKTGKLGYTKKQEERDFRGVIPLEDCNIEEVTDEEQPPPSKSSKDKKANGPDSGKGPSLAFKITSKVPYKTVLKAHSAVVLKAESVADKVEWTNKIRRVIQPSRGGQTKGASSGGGLTLRQSLSDGSLDTMTRKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISGQSSARIEELLLEDPNVKRRRERYQKQSSLLSKLTRQLSIHDNSAAAAGWSDNDAAESSPRTSGTPGDDWRSAFDAAANGRVDSRRSSSNGRSRYSNDPAQNGDINSGSNSSSRRTPNRLPPAPPQSSSGSKYF 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10754876 10767857 + CmoCh09G012490.1 Cmo09g01249 389251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01249 926 Gene3D - 34 324 IPR027417 -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 708 732 - -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 637 654 - -
Cmo09g01249 926 Pfam Dynamin GTPase effector domain 743 825 IPR003130 GO:0003924|GO:0005525
Cmo09g01249 926 ProSiteProfiles GED domain profile. 745 838 IPR020850 -
Cmo09g01249 926 SUPERFAMILY PH domain-like 580 704 - -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 837 926 - -
Cmo09g01249 926 Gene3D Dynamin, middle domain 337 544 - -
Cmo09g01249 926 Pfam Dynamin family 45 209 IPR045063 -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 532 554 - -
Cmo09g01249 926 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 39 309 IPR030381 GO:0005525
Cmo09g01249 926 Gene3D - 575 699 IPR011993 -
Cmo09g01249 926 SMART dynamin_3 11 251 IPR001401 GO:0003924|GO:0005525
Cmo09g01249 926 MobiDBLite consensus disorder prediction 874 909 - -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 629 663 - -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 704 742 - -
Cmo09g01249 926 Coils Coil 4 24 - -
Cmo09g01249 926 PRINTS Dynamin signature 42 60 IPR022812 -
Cmo09g01249 926 PRINTS Dynamin signature 67 84 IPR022812 -
Cmo09g01249 926 PRINTS Dynamin signature 179 197 IPR022812 -
Cmo09g01249 926 PRINTS Dynamin signature 198 214 IPR022812 -
Cmo09g01249 926 PANTHER DYNAMIN-2A 2 856 - -
Cmo09g01249 926 PANTHER DYNAMIN 2 856 IPR022812 -
Cmo09g01249 926 SMART GED_2 740 826 IPR003130 GO:0003924|GO:0005525
Cmo09g01249 926 Pfam Dynamin central region 262 500 IPR000375 -
Cmo09g01249 926 SMART PH_update 579 706 IPR001849 -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 509 575 - -
Cmo09g01249 926 Gene3D Dynamin, middle domain 700 813 - -
Cmo09g01249 926 CDD DLP_1 40 309 IPR001401 GO:0003924|GO:0005525
Cmo09g01249 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 318 IPR027417 -
Cmo09g01249 926 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 68 77 IPR019762 -
Cmo09g01249 926 MobiDBLite consensus disorder prediction 509 531 - -
Cmo09g01249 926 ProSiteProfiles PH domain profile. 578 704 IPR001849 -
Cmo09g01249 926 Pfam PH domain 583 703 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01249 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1607.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00920 Cmo09g01249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03142 Cmo-Chr4:21752970 Cmo09g01249 Cmo-Chr9:10754876 0 dispersed
Cmo09g01249 Cmo-Chr9:10754876 Cmo15g00021 Cmo-Chr15:151070 0 dispersed
Cmo01g00920 Cmo-Chr1:5183766 Cmo09g01249 Cmo-Chr9:10754876 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01249 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0