Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01250 ATGCGGAGGCGTGTTGGAGCTCTTCTTCGTGATAGAAGAGCTGTTGAAGTGTCTATTAGTGGACGGAATCATTTGAACAAAGTTTCTCTGTCTTTGGTTTTTGTTCTGTGGGGACTTGTCTTCCTCTTTAGCTTATGGTTCATCCGTGGGGATGGCTGTCAAGAAGGATCAGTTTTACTTCCTGATGGTGCATCTAATTCAAATGAATCTACATTGGAAAGTAACAAGGACTCTGACGTTTTATATGAACCTTCAAAAGGAGAAACCGATTGTACCAGTCATTTAAATGATTCGTGCTCAATTGATGCTACAAGCCATGACGTTTTATACGAACCTTCAAAAGGAGAAACTGATTGTACCAGTCGTTTAAACGATTCGTGCTCAATTGATGCTACAAGCCAGGCTTCTGACAATGAAATGCTTTCAAGTGAAGAAAGTAGCAGTCATGTACTAGCTGTTACGGGGTTGCCTGAGGCTGAGAGCTCGAGCACCGGAGTAAAATCTGAAAGTAAACCTCTCAAGGTAGATATGTCGTCTGACACTGTTCTACTGGGCCTTGAAGAATTCAAAAGCAGAGTCTTTACATCTCGGACTAAGGATGAAACTGGTCAGGCTGGGAATACTATCCATAGAGTAGAACCTGGTGGTGCAGAGTACAATTACGCTTCAGCTTCAAAGGGAGCAAAGGTGTTGGCTTTCAACAAGGAAGCAAAAGGAGCTTCTAACATCTTAGGCAAGGACAAAGATAAGTACCTCAGAAATCCATGTTCTGCTGAAGAGAAATTTGTTGTCATAGAACTTTCAGATGAAACCTTAGTAGTAACAATCGAAATCGCTAATTTTGAGCACCATTCTTCTAACTTGAAAGAATTCGAGCTACATGGCAGTTTGGTTTATCCAACAGATGTTTGGTTCAAGCTTGGGAATTTCACTGCTCCAAATGCAAAACATGCACATAGATTTGTTCTCAAGGATCCAAAATGGGTGAGGTACTTAAAGTTGAATCTTCTTACCCACTATGGTTCAGAATTCTATTGCACACTCAGCACTGTTGAAGTTTACGGAATGGATGCTGTTGAAATGATGCTAGAGGATTTGATATCTGCTCAACATAAACCCTCTATATCAGATGAAGCTACTATCGATAAGCGAGTAACTCCGTCCCAGCCTGGACCCAATGATGTAGGACAACAACATCGTAGAGAGTCGCAATCTCTTGCTAATGAGGAAAGTGATGATGATGATGTCGTTTTAGAACTTTCAAAGAGTAATATACCTGATCCGGTCGAAGAATCACACCATCAACAACCTGGCAGAATGCCTGGTGACACTGTTCTCAAAATTTTGACACAGAAAGTTCGTTCATTAGACCGAAGTCTATCTGTTTTGGAGCGGTATCTCGAGGACTCAACTTCCAAATATGGCAATATATTCAAAGAGTTCGACAAAGATATAGGAAATAATGGTCTACTTATTGAGAAGACTCGCGAGGATATAAGAAATATTCTTAAAGTCCAGGATAGCACAGATAAAGATCTTCATGATCTCATTTCTTGGAAGTCCACTGTTTCCTTGCAGTTGGATGGTCTGCAAAGGCATAATGCTATTCTCAGATCTGAGATTGAAAGGGTCCAGAAGAATCAAACTTTTCTGGAAAACAAAGGAATAGTTGTTTTTGTTGTGTGCATCATTTTTTCATGGTTTGCTATTTTAAGATTATTTTTGCATATTGTTGTCAGAGTACGTGAGAGAACAAATAGTTCCAGGAAATTTTGTTGTATAAGCCCTTCCTGGTATCTATTACTTTTGAGCTGTTATCAAAGGCATGGAGAAGGAGAAATGGAGCATTCTAAGAAGCCATTCTTCTTCACATCTTTTAACCCATTTTTGTTTGTGTTAATTTTTCTTCCTTCTCTTGTACTTGTTTCTCTAGTTTGTAAGCTTGATTTGGAGATTCCTTGGACGACTGGCTTGGATAAGGTCTTCTCAAGTTTTGCTCCTCACTTGCTTGACCCAGCTGCTTTGGACCTCAAGGGACACTCTTTTTCCTCTCCCATTGAAGGATCACAAACAACGGTACCTGAAAGTAAAGAACGTAAGGGAAAAGATGCAACTCCGGGGATCAGTAGAGTTGAGAAATACAGTATGTTGGAGAAAATAGAGGAGAAGTTGGGAAGAGCAAGAGCAGCCATAAGAGAAGCGGGTCGAGTTCGTAACCTTACGTCTGTACATGATGATCCTGACTATGTTCCTAGAGGTCCAATATATAGAAACCCAAATGCTTTCCACAGGAGCTACCTAGAAATGGAGAGGCTTTTAAAGATATACATATACAAGGAAGGAGAGCCACCAATGTTCCATGAAGGTCCATGCAAGAGCATATACTCCACCGAAGGAAGGTTCATTCATGAAATGGAGAAGGGAAACTCATACACAACCAATGACCCTGATCAAGCCCTTCTCTATTTCCTCCCTTTCAGCGTTGTCAATTTGGTTCAATATCTCTATGAACCAAACTCTCATGATGTTAATGCCATTGGCGTTGCAGTCCAAGACTATATCAATGTCATCTCGAACAAGCATTTGTTTTGGAATCGTAGCCTTGGTGCTGACCATTTCATGCTTTCGTGTCATGATTGGGGGCCACGAACCACCTCGTATGTTCCGTATTTATTCAACAACTCCATCAGGGTATTGTGTAATGCAAATGTTTCAGAAGGTTTCCATCCCTCTAAAGACGCATCGTTCCCAGAAATCCATCTTCGAACGGGAGAAATCGATGGACTTCTCGGGGGACTCTCGCCATCTCGTCGACCTATTCTTGCATTCTTTGCAGGTCGTTTACACGGCCACATAAGGTACCTACTACTGCAAAAGTGGAAGGAAAAAGACAATGACGTGGTTGTTTACGACGAGCTTCCAAGCGGAGTATCATACGAGTCGATGTTGAAGAAGAGTCGGTTTTGTTTATGCCCGAGCGGGTATGAAGTAGCGAGTCCAAGAGTTGTGGAAGCTATATATGCTGAATGTGTACCTGTGTTGATATCAGAAAGCTATGTTCCTCCTTTCAGTGATGTTTTGAATTGGAATTCATTTGGTGTGCAAATAGAAGTGAAGGATATAGGAAACATAAAAGAGATACTAAGAGGGATATCTCAATCTCAGTACTTGAGAATGCAAAGGAGAGTGAAGCAAGTTCAGAGACACTTTGTGATCAATGGAACTCCCAAGAGATATGATGCTTTCCATATGATACTTCACTCGATCTGGCTCAGAAGGCTGAACACTGAGAAATGTTGTATATATACACAAACCTCTCTCCACTTTGAAGTTTCTAAGGAATATAAACTTGAGGAGATCACTAAATATGACCCGATGTTGCTGAGAATCTGA 3393 40.97 MRRRVGALLRDRRAVEVSISGRNHLNKVSLSLVFVLWGLVFLFSLWFIRGDGCQEGSVLLPDGASNSNESTLESNKDSDVLYEPSKGETDCTSHLNDSCSIDATSHDVLYEPSKGETDCTSRLNDSCSIDATSQASDNEMLSSEESSSHVLAVTGLPEAESSSTGVKSESKPLKVDMSSDTVLLGLEEFKSRVFTSRTKDETGQAGNTIHRVEPGGAEYNYASASKGAKVLAFNKEAKGASNILGKDKDKYLRNPCSAEEKFVVIELSDETLVVTIEIANFEHHSSNLKEFELHGSLVYPTDVWFKLGNFTAPNAKHAHRFVLKDPKWVRYLKLNLLTHYGSEFYCTLSTVEVYGMDAVEMMLEDLISAQHKPSISDEATIDKRVTPSQPGPNDVGQQHRRESQSLANEESDDDDVVLELSKSNIPDPVEESHHQQPGRMPGDTVLKILTQKVRSLDRSLSVLERYLEDSTSKYGNIFKEFDKDIGNNGLLIEKTREDIRNILKVQDSTDKDLHDLISWKSTVSLQLDGLQRHNAILRSEIERVQKNQTFLENKGIVVFVVCIIFSWFAILRLFLHIVVRVRERTNSSRKFCCISPSWYLLLLSCYQRHGEGEMEHSKKPFFFTSFNPFLFVLIFLPSLVLVSLVCKLDLEIPWTTGLDKVFSSFAPHLLDPAALDLKGHSFSSPIEGSQTTVPESKERKGKDATPGISRVEKYSMLEKIEEKLGRARAAIREAGRVRNLTSVHDDPDYVPRGPIYRNPNAFHRSYLEMERLLKIYIYKEGEPPMFHEGPCKSIYSTEGRFIHEMEKGNSYTTNDPDQALLYFLPFSVVNLVQYLYEPNSHDVNAIGVAVQDYINVISNKHLFWNRSLGADHFMLSCHDWGPRTTSYVPYLFNNSIRVLCNANVSEGFHPSKDASFPEIHLRTGEIDGLLGGLSPSRRPILAFFAGRLHGHIRYLLLQKWKEKDNDVVVYDELPSGVSYESMLKKSRFCLCPSGYEVASPRVVEAIYAECVPVLISESYVPPFSDVLNWNSFGVQIEVKDIGNIKEILRGISQSQYLRMQRRVKQVQRHFVINGTPKRYDAFHMILHSIWLRRLNTEKCCIYTQTSLHFEVSKEYKLEEITKYDPMLLRI 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10767588 10777634 - CmoCh09G012500.1 Cmo09g01250 389252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01250 1130 Coils Coil 527 554 - -
Cmo09g01250 1130 Gene3D - 236 366 - -
Cmo09g01250 1130 Coils Coil 717 737 - -
Cmo09g01250 1130 PANTHER GLYCOSYLTRANSFERASE-RELATED 675 1096 - -
Cmo09g01250 1130 SUPERFAMILY Galactose-binding domain-like 240 354 IPR008979 -
Cmo09g01250 1130 MobiDBLite consensus disorder prediction 379 415 - -
Cmo09g01250 1130 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 675 1096 IPR004263 GO:0006486|GO:0016757
Cmo09g01250 1130 MobiDBLite consensus disorder prediction 381 402 - -
Cmo09g01250 1130 Pfam Sad1 / UNC-like C-terminal 234 356 IPR012919 -
Cmo09g01250 1130 MobiDBLite consensus disorder prediction 62 78 - -
Cmo09g01250 1130 ProSiteProfiles SUN domain profile. 194 358 IPR012919 -
Cmo09g01250 1130 Pfam Exostosin family 771 1050 IPR040911 -
Cmo09g01250 1130 MobiDBLite consensus disorder prediction 62 91 - -
Cmo09g01250 1130 MobiDBLite consensus disorder prediction 685 705 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01250 - - - cmax:111472033 1139.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00919 Cmo09g01250 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00932 Cmo-Chr2:5716822 Cmo09g01250 Cmo-Chr9:10767588 2.22E-23 dispersed
Cmo02g00933 Cmo-Chr2:5718062 Cmo09g01250 Cmo-Chr9:10767588 3.95E-70 dispersed
Cmo03g01182 Cmo-Chr3:9249825 Cmo09g01250 Cmo-Chr9:10767588 2.79E-172 dispersed
Cmo07g00911 Cmo-Chr7:4363035 Cmo09g01250 Cmo-Chr9:10767588 5.35E-177 dispersed
Cmo09g01250 Cmo-Chr9:10767588 Cmo15g01364 Cmo-Chr15:9323906 1.78E-112 dispersed
Cmo10g00555 Cmo-Chr10:2506845 Cmo09g01250 Cmo-Chr9:10767588 2.95E-07 dispersed
Cmo16g00801 Cmo-Chr16:4085144 Cmo09g01250 Cmo-Chr9:10767588 2.12E-72 dispersed
Cmo15g00020 Cmo-Chr15:145369 Cmo09g01250 Cmo-Chr9:10767588 2.11E-179 transposed
Cmo15g01166 Cmo-Chr15:8130824 Cmo09g01250 Cmo-Chr9:10767588 3.30E-109 transposed
Cmo01g00919 Cmo-Chr1:5179022 Cmo09g01250 Cmo-Chr9:10767588 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005606 0 3 0 0 0 1 3 1 1 1 1 1 2 1 2 2 1 0 3 1 1 2 3 1 1 1 2 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01250 Cmo_Chr09 FPKM 3.094918 3.775655 44.133583 40.700264 86.765633 80.483978 86.503288 17.126383 16.658718 15.480131