Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01260 ATGATGCTTTCTTCTTCTTCTTCTTCAAATGGTAAATGGAAATACAATGTGTTCTTGAGCTTCAGAGGGGAAGACACCCGCGGCGGCTTCACAGATCATCTCTACAAAGCCTTAATACACCAAGGAATCTCCACCTTCAGAGACGAAGGCGAGATCGAAGAAGGCGCCGACATTTCTACCGATCTGTCGGCCGCCATTGAAGCATCCAGAATCGCGCTCGTTGTGGTTTCAGAAAACTACGGTTCGTCAAGGTGGTGCCTTGAGGAGCTGGATAAGATCTTTGAGTGCCACCAAAGGCTTGGGATGCTGGTGTTGCCAATCTTTTATAAAGTGGATCCTTCTCATGTTCGGAAGCAGACAGGAACATTTGCAGAAGCTTTTGCTAAACATGAACTCAGATTTGGAGAACATAACCCCAACATCCAGAAATGGAGGCACCTTCTTACACACCTCGCCAACCTCAAAGCTTGGCTTTCCCAACCTTGGACACATGAATCAAAAGTTATAGAAGAAATTACAACCATCCTATGGAATAGAATCAAGCCAACTTTGAAAGTCACTCAAGAACACCAATTAGTTGGAATCAATCCTAAACTAACCAAACTTTCTTCTCTTTTGAATCCTAACTCCGATGAGGATGTGATATGGGTAGGAATTCATGGAATGGGTGGCATTGATGAGTGGGAGAAAGAGATATTTCTAGACGTTGCTTGCTTCTTCAAGGGGAAGAGAAACGAGCTTGTAGAAGAGATTCTACATGATTGTGGTTTCCATGCCAAAACAAGGGTTGATCGTCTCATTCAAAAATCTCTCTTAACTCTCTCTTGTGACAATGAATTGAGGATGCATGATTTATTGCAAGAAATGGGTCGAAAAATTGTTCGTCATAAACCTATTCAAGATCGACTATGGCGCCAGAAGGATACTAAAAGCATGGTTAGAGAAGCATCGGTTGAAAGCATATTATTCAAGTCGACAAAAAACGTTGTGGAGTTTCCAATTTCGTTCTCAAGAATGCACCAACTAAGACTGCTTAATTTTCAGAATGTGAGGCTGAAAAATGAGTTGGAATATTGCATTCCAAGTGAGTTGAGATATTTGAAGTGGAAAGGATATCCCATGGAGATTTTGGTATTGAATTCTGAAGAATATAAGCTTATTAAGCTTCACATGTGCCACAGCAATTTGAAGCAATTTTGGCATGGAGAAAAGCATTTCGAGAAGCTGAAGTATATCAAACTCAACTATTCTCAGAAGTTGTCCAAAACTCCCAACTTTGAAACTATTCCAAATCTCACAAGATTGGAGCTTGAAGATTGCACAAATTTGGTCAACATTCATCCATCAATTTTCACCGCAAAAGAACTCACTTTTTTGAGTTTGAAAGATTGCATCAATCTCACCAATTTTTCAACCAAAATTAACCTCAAAGCTCTTGAAATTTTGATTCTCTCTGGGTGTTCAAAACTCAAAAAGATCCCAGAATTTTCAGGCAACACAGATATATTACTGGAACTCCATTTAGATAGAACCTCCATATCAAGCCTACCTTCATCCATAGCAAGCTTGGATCGCCTAATAGTGTTGAGTTTAACCAACTGCAAAAATCTTATCAACATTTCAAACGTATTGGATAAGATCACATCTCTCAAAAAGCTTAAATCTTTCGGGATGTTCGAAGCTCGAAAAAAGAAAACAAAAGCGGGGCGACGTCGAAACGGCAGAGCTCGACGTGAAAGGAATCGAACGAAGAAGAAGGGACGACGGAGACAATATCTTTAG 1782 40.24 MMLSSSSSSNGKWKYNVFLSFRGEDTRGGFTDHLYKALIHQGISTFRDEGEIEEGADISTDLSAAIEASRIALVVVSENYGSSRWCLEELDKIFECHQRLGMLVLPIFYKVDPSHVRKQTGTFAEAFAKHELRFGEHNPNIQKWRHLLTHLANLKAWLSQPWTHESKVIEEITTILWNRIKPTLKVTQEHQLVGINPKLTKLSSLLNPNSDEDVIWVGIHGMGGIDEWEKEIFLDVACFFKGKRNELVEEILHDCGFHAKTRVDRLIQKSLLTLSCDNELRMHDLLQEMGRKIVRHKPIQDRLWRQKDTKSMVREASVESILFKSTKNVVEFPISFSRMHQLRLLNFQNVRLKNELEYCIPSELRYLKWKGYPMEILVLNSEEYKLIKLHMCHSNLKQFWHGEKHFEKLKYIKLNYSQKLSKTPNFETIPNLTRLELEDCTNLVNIHPSIFTAKELTFLSLKDCINLTNFSTKINLKALEILILSGCSKLKKIPEFSGNTDILLELHLDRTSISSLPSSIASLDRLIVLSLTNCKNLINISNVLDKITSLKKLKSFGMFEARKKKTKAGRRRNGRARRERNRTKKKGRRRQYL 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10975798 10979424 - CmoCh09G012600.1 Cmo09g01260 389262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01260 593 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 225 - -
Cmo09g01260 593 MobiDBLite consensus disorder prediction 564 593 - -
Cmo09g01260 593 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 225 551 - -
Cmo09g01260 593 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 225 IPR044974 GO:0006952
Cmo09g01260 593 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 225 551 IPR044974 GO:0006952
Cmo09g01260 593 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Cmo09g01260 593 SUPERFAMILY L domain-like 327 554 - -
Cmo09g01260 593 SMART till_3 14 154 IPR000157 GO:0007165
Cmo09g01260 593 Gene3D Ribonuclease Inhibitor 316 501 IPR032675 -
Cmo09g01260 593 Gene3D Ribonuclease Inhibitor 502 560 IPR032675 -
Cmo09g01260 593 SUPERFAMILY Winged helix DNA-binding domain 223 312 IPR036390 -
Cmo09g01260 593 Pfam TIR domain 14 194 IPR000157 GO:0007165
Cmo09g01260 593 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Cmo09g01260 593 Gene3D - 9 186 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01260 - - - cpep:111796790 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01260 Cmo-Chr9:10975798 Cmo09g01263 Cmo-Chr9:11057739 9.13E-134 dispersed
Cmo09g01256 Cmo-Chr9:10903764 Cmo09g01260 Cmo-Chr9:10975798 8.50E-33 proximal
Cmo09g01259 Cmo-Chr9:10951086 Cmo09g01260 Cmo-Chr9:10975798 1.29E-122 tandem
Cmo09g01260 Cmo-Chr9:10975798 Cmo09g01261 Cmo-Chr9:11015106 4.58E-131 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01260 . . . . . . Bhi06g00165 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002764 0 1 0 0 0 2 0 2 2 1 2 2 3 1 2 7 2 0 0 2 1 2 2 4 4 3 0 7 3 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01260 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.158258 0.115483 0.032406