Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo09g01262 ATGATGCTTTCTTCTTCTTCTTCAACTGGTAAATGGAAATTCAATGTGTTCTTGAGCTTCAGAGGGGAAGACACCCGTGGCGGCTTCACAGACCATCTCTACAAAGCCTTAATACACAAAGGAATCTCCACCTTCAGAGACGAAGACGACATCGAAGAAGACACCGACATTTCTTCCGATCTGTCCGCCGCCATTGAAGCGTCGAGAATCGCGCTCGTTGTGGTTTCAGAAAACTACGCTTCTTCTAGGTGGTGCCTTGAGGAGCTGAGTAAGATCTTTGAATGCCACCACCGGCTTGGGATGACCGTGTTGCCCATCTTTTATGAACTAAGATTTGGAGAACATAACCCCAACATCCAAAAATGGAGGCAACTTCTTACAAAGCTCGCCAACCTCAAGGCTTGGCTTTTGGAATCTTGGACACGTGAATCCGAAGTCATTGAAGAAATCACGATGGTTCTATGGAAGAGAATCAAACCGACCTTGAGAGTCACTCAAGAACACCAACTAGTTGGAATCAAATCTAAACTAACCAAACTTTCTTCTCTTTTGAGCCCGAACTCAGATGAGGATGTGATCTGGGTAGGAATTCATGGAATGGGTGGCATTGGTAAGACGACATTAGCTAAGGTGAGAGAAGCATTAGTTGAAAGCATATTGTTCAAGTCGACAAAAAACGTTGTGGAGTTCCCAATTTCGTTCTCAAGAATGCAGCAACTAAGGCTGCTTAATTTTCACAATGTGAAGCTGAAAAATGAGTCCGAATATTGCATTCCAAGTGAGTTGAGATATTTGAAGTGGAAAGGATATCCCTTGGAGATTTTGCCATTCAATTCTGAAGAATATAAGGTTATTGTGCTTTACATGTGCTACAGCAATTTGAAGCAATTTTGGCATGGAGAAAAGCATTTGGAGAAGCTGAAGTATATCAAACTCAATCATTCTCAGAAGTTGTCCAAAACTCCAAACTTTGAAACTATTCCAAATCTCACAACATTGGAGCTTGAAGTGTTGAGCTTAACCAATTGCAAAAATCTTATCAACATTTCAAATGCGTTGGATAAGATTACATCTCTCAAAAGCTTAAATCTTTTGGGATGTTCGAAGCTTGGAAATAGAAAACGAAAGCGGGGCGATGTCGAAACGGTGGAGTTAGACGTGAGACGAACGGCACGAAGAACGGACGACGGAGACAATATCTTTAGAAAGATTTTTCTTTGGTTATGCAAAGCTCCAACAAGTGGCGTTTTTGGGATCCCATCACTGGCTGGTTTGTACTCTCTTACAAGCCTAAATTTGAGTGATTGCAAGCTTGAGGAAGTCCCGGAAGGGATCGAGTGTTTGGTGTCGTTGGTGCATCTGAACTTGTCTCGAAATAATTTCTCTCGTCTTCCTACGAGCATTTCTCGACTCCATAACTTGAAAAGATTGAACATAAACGAGTGTGAAAAGCTTCTTCATTTTCCAGAACTACCGCCAAGTATCTCAAGGTTGAACTCAAAGGGCTGCATTTCGGTGAAAGATTTTCTAGACATTTCAGAAATTGAGCATTCCATAACAGAAGTGAATCTTCTAAACTGCTACCAATGGGCTGACAACAAAGGGCACCACAAATTGATCATTTCTTCGATGCAGAAGATGCTTTTCAGAAAAGGACCCTTCAGCATCATGTTTCCCGGGAGCGAGATTCCAGATTGGTTCACGACGAAAAAAAAGGGTTCTTCGATATGCGTCAAGTGGGATCATGGCGCGCTGAACGCTGACATGGTTCGCTTTATGCTCTGCGTCGTTTGTGGACCGAGCAACAAAAACAACATCGCCAATGTTTCCTACAACATTTTTGTCTCTATGACCGGAAAAGACCGTAACCACCCAAATTTGAACAATGAAAATTCTATGGTTGGTGCATTCATTGTTTCAGGGATGAAGAAGTTAGACCACATTTGTGTTGGAAAGTGGGATAGTGAAAGAGATAGGAATGGATAG 1986 42.09 MMLSSSSSTGKWKFNVFLSFRGEDTRGGFTDHLYKALIHKGISTFRDEDDIEEDTDISSDLSAAIEASRIALVVVSENYASSRWCLEELSKIFECHHRLGMTVLPIFYELRFGEHNPNIQKWRQLLTKLANLKAWLLESWTRESEVIEEITMVLWKRIKPTLRVTQEHQLVGIKSKLTKLSSLLSPNSDEDVIWVGIHGMGGIGKTTLAKVREALVESILFKSTKNVVEFPISFSRMQQLRLLNFHNVKLKNESEYCIPSELRYLKWKGYPLEILPFNSEEYKVIVLYMCYSNLKQFWHGEKHLEKLKYIKLNHSQKLSKTPNFETIPNLTTLELEVLSLTNCKNLINISNALDKITSLKSLNLLGCSKLGNRKRKRGDVETVELDVRRTARRTDDGDNIFRKIFLWLCKAPTSGVFGIPSLAGLYSLTSLNLSDCKLEEVPEGIECLVSLVHLNLSRNNFSRLPTSISRLHNLKRLNINECEKLLHFPELPPSISRLNSKGCISVKDFLDISEIEHSITEVNLLNCYQWADNKGHHKLIISSMQKMLFRKGPFSIMFPGSEIPDWFTTKKKGSSICVKWDHGALNADMVRFMLCVVCGPSNKNNIANVSYNIFVSMTGKDRNHPNLNNENSMVGAFIVSGMKKLDHICVGKWDSERDRNG 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11031083 11034747 - CmoCh09G012620.1 Cmo09g01262 389264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo09g01262 661 Pfam C-JID domain 558 612 IPR045344 -
Cmo09g01262 661 Gene3D - 161 218 IPR027417 -
Cmo09g01262 661 Gene3D Ribonuclease Inhibitor 219 391 IPR032675 -
Cmo09g01262 661 Gene3D Ribonuclease Inhibitor 396 539 IPR032675 -
Cmo09g01262 661 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 224 335 IPR044974 GO:0006952
Cmo09g01262 661 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 335 648 IPR044974 GO:0006952
Cmo09g01262 661 PRINTS Disease resistance protein signature 194 209 - -
Cmo09g01262 661 PRINTS Disease resistance protein signature 469 485 - -
Cmo09g01262 661 Gene3D - 6 160 IPR035897 -
Cmo09g01262 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 211 IPR027417 -
Cmo09g01262 661 Pfam TIR domain 13 172 IPR000157 GO:0007165
Cmo09g01262 661 SUPERFAMILY L domain-like 233 527 - -
Cmo09g01262 661 Pfam NB-ARC domain 176 210 IPR002182 GO:0043531
Cmo09g01262 661 ProSiteProfiles Leucine-rich repeat profile. 450 471 IPR001611 GO:0005515
Cmo09g01262 661 PANTHER DISEASE RESISTANCE PROTEIN TAO1-LIKE 224 335 - -
Cmo09g01262 661 PANTHER DISEASE RESISTANCE PROTEIN TAO1-LIKE 335 648 - -
Cmo09g01262 661 SMART till_3 13 132 IPR000157 GO:0007165
Cmo09g01262 661 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 133 IPR035897 -
Cmo09g01262 661 Pfam Leucine rich repeat 427 481 IPR001611 GO:0005515
Cmo09g01262 661 ProSiteProfiles TIR domain profile. 12 158 IPR000157 GO:0007165
Cmo09g01262 661 SMART LRR_typ_2 448 471 IPR003591 -
Cmo09g01262 661 SMART LRR_typ_2 425 447 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo09g01262 - - - cpep:111796784 787.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01262 Cmo-Chr9:11031083 Cmo17g01236 Cmo-Chr17:9829164 6.61E-25 dispersed
Cmo09g01261 Cmo-Chr9:11015106 Cmo09g01262 Cmo-Chr9:11031083 1.06E-69 tandem
Cmo09g01262 Cmo-Chr9:11031083 Cmo09g01263 Cmo-Chr9:11057739 2.85E-119 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01262 . . . . . . Bhi06g00166 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002764 0 1 0 0 0 2 0 2 2 1 2 2 3 1 2 7 2 0 0 2 1 2 2 4 4 3 0 7 3 0 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo09g01262 Cmo_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.067525 0.245256